tag:joss.theoj.org,2005:/papers/edited_by/@karthikJournal of Open Source Software2021-06-07T10:21:45ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/22972021-06-07T10:21:45Z2021-06-08T00:00:28ZCliquePercolation: An R Package for conducting and visualizing results of the clique percolation network community detection algorithmaccepted0.3.02021-01-06 15:14:25 UTC622021-06-07 10:21:45 UTC620213210JensLangeUniversity of Hamburg, Hamburg, Germany0000-0002-5375-324710.21105/joss.03210https://doi.org/10.5281/zenodo.4844318Rhttps://joss.theoj.org/papers/10.21105/joss.03210.pdfclique percolation community detection, networks, data visualizationtag:joss.theoj.org,2005:Paper/14372020-12-04T18:02:00Z2021-02-15T11:31:09ZAkmedoids R package for generating directionally-homogeneous clusters of longitudinal data setsacceptedv0.1.52020-01-13 14:07:03 UTC562020-12-04 18:02:00 UTC520202379MonsuruAdepejuCrime and Well-being Big Data Centre, Manchester Metropolitan University0000-0002-9006-4934SamuelLangtonCrime and Well-being Big Data Centre, Manchester Metropolitan University0000-0002-1322-1553JonBannisterCrime and Well-being Big Data Centre, Manchester Metropolitan University0000-0002-1350-510X10.21105/joss.02379https://doi.org/10.5281/zenodo.4294266Rhttps://joss.theoj.org/papers/10.21105/joss.02379.pdfAnchored k-medoids, k-means, crime, longitudinal clustering, long-term trendstag:joss.theoj.org,2005:Paper/18372020-08-03T15:20:50Z2021-02-15T11:30:19ZtidyHeatmap: an R package for modular heatmap production based on tidy principlesacceptedv1.1.02020-07-08 10:37:23 UTC522020-08-03 15:20:50 UTC520202472StefanoMangiolaBioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia, Department of Medical Biology, University of Melbourne, Melbourne, Victoria, Australia.0000-0001-7474-836XAnthonyT.PapenfussBioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia, Department of Medical Biology, University of Melbourne, Melbourne, Victoria, Australia., Peter MacCallum Cancer Centre, Melbourne, VIC 3000, Australia., School of Mathematics and Statistics, University of Melbourne, Melbourne, VIC 3010, Australia.0000-0002-1102-850610.21105/joss.02472https://doi.org/10.5281/zenodo.3966515Rhttps://joss.theoj.org/papers/10.21105/joss.02472.pdftidyverse, tidy, heatmap, data visualizationtag:joss.theoj.org,2005:Paper/15832020-07-16T07:46:48Z2021-02-15T11:30:53ZldaPrototype: A method in R to get a Prototype of multiple Latent Dirichlet Allocationsacceptedv0.1.12020-03-10 15:00:29 UTC512020-07-16 07:46:48 UTC520202181JonasRiegerTU Dortmund University0000-0002-0007-447810.21105/joss.02181https://doi.org/10.5281/zenodo.3945836Rhttps://joss.theoj.org/papers/10.21105/joss.02181.pdftopic modeling, natural language processing, text data, tuning, model selection, high performance computing, parallelizationtag:joss.theoj.org,2005:Paper/11972020-02-11T18:39:53Z2023-06-21T18:48:11ZOnlineStats.jl: A Julia package for statistics on data streamsacceptedv1.0.02019-09-05 08:54:29 UTC462020-02-11 18:39:53 UTC520201816JoshDayLoon Analytics, LLC0000-0002-7490-6986HuaZhouUCLA Biostatistics0000-0003-1320-711810.21105/joss.01816https://doi.org/10.5281/zenodo.3659245Juliahttps://joss.theoj.org/papers/10.21105/joss.01816.pdfstatistics, big data, online algorithms, streaming datatag:joss.theoj.org,2005:Paper/11512019-11-21T21:05:31Z2021-02-15T11:31:48ZWelcome to the Tidyverseacceptedv1.3.02019-08-09 21:48:09 UTC432019-11-21 21:05:31 UTC420191686HadleyWickhamRStudio0000-0003-4757-117XMaraAverickRStudio0000-0001-9659-6192JenniferBryanRStudio0000-0002-6983-2759WinstonChangRStudio0000-0002-1576-2126LucyD'AgostinoMcGowanDepartment of Biostatistics, Johns Hopkins Bloomberg School of Public Health0000-0001-7297-9359RomainFrançoisRStudio0000-0002-2444-4226GarrettGrolemundRStudio0000-0002-7765-6011AlexHayesUniversity of Wisconsin, Madison0000-0002-4985-5160LionelHenryRStudio0000-0002-8143-5908JimHesterRStudio0000-0002-2739-7082MaxKuhnRStudio0000-0003-2402-136XThomasLinPedersenRStudio0000-0002-5147-4711EvanMillerNoneStephanMiltonBacheRedbubbleKirillMüllercynkra0000-0002-1416-3412JeroenOomsUniversity of California, BerkeleyDavidRobinsonFlatiron HealthDanaPaigeSeidelDepartment of Environmental Science, Policy, & Management, University of California, Berkeley0000-0002-9088-5767VitalieSpinuErasmus University Rotterdam0000-0002-2138-3413KohskeTakahashiChukyo University, Japan0000-0001-6076-4828DavisVaughanRStudio0000-0003-4777-038XClausWilkeDepartment of Integrative Biology, The University of Texas at Austin0000-0002-7470-9261KaraWooSage Bionetworks0000-0002-5125-4188HiroakiYutaniLINE Corporation0000-0002-3385-723310.21105/joss.01686https://doi.org/10.5281/zenodo.3547813Rhttps://joss.theoj.org/papers/10.21105/joss.01686.pdfdata sciencetag:joss.theoj.org,2005:Paper/9822019-07-08T12:21:44Z2021-08-13T15:50:56ZslurmR: A lightweight wrapper for HPC with Slurmaccepted0.1-02019-05-02 21:13:05 UTC642019-07-08 12:21:44 UTC620211493GeorgeG VegaYonDepartment of Preventive Medicine, University of Southern California0000-0002-3171-0844PaulMarjoramDepartment of Preventive Medicine, University of Southern California0000-0003-0824-744910.21105/joss.01493https://doi.org/10.5281/zenodo.3272773R, Rebolhttps://joss.theoj.org/papers/10.21105/joss.01493.pdfhpc, batch, slurm, parallel computingtag:joss.theoj.org,2005:Paper/10112019-07-04T10:10:57Z2021-02-15T11:32:10Zcde - R package to retrieve data from the Environment Agency Catchment Data Explorer siteaccepted0.4.02019-05-22 12:03:26 UTC392019-07-04 10:10:57 UTC420191473RobertA.BriersSchool of Applied Sciences, Edinburgh Napier University0000-0003-0341-120310.21105/joss.01473https://doi.org/10.5281/zenodo.2577178Rhttps://joss.theoj.org/papers/10.21105/joss.01473.pdfwater quality, Water Framework Directivetag:joss.theoj.org,2005:Paper/9742019-06-25T22:21:12Z2021-02-15T11:32:15Zinsight: A Unified Interface to Access Information from Model Objects in Raccepted0.2.12019-04-23 14:10:53 UTC382019-06-25 22:21:12 UTC420191412DanielLüdeckeUniversity Medical Center Hamburg-Eppendorf, Germany0000-0002-8895-3206PhilipD.WaggonerCollege of William & Mary, Virginia, U.S.0000-0002-7825-7573DominiqueMakowskiNanyang Technological University, Singapore0000-0001-5375-996710.21105/joss.01412https://doi.org/10.5281/zenodo.3256639Rhttps://joss.theoj.org/papers/10.21105/joss.01412.pdfmodel information, regression modelstag:joss.theoj.org,2005:Paper/9832019-06-20T19:48:51Z2021-02-15T11:32:13Zphylosmith: an R-package for reproducible and efficient microbiome analysis with phyloseq-objectsaccepted0.99.02019-05-03 03:31:15 UTC382019-06-20 19:48:51 UTC420191442SchuylerD.SmithDepartment of Bioinformatics and Computational Biology, Iowa State University0000-0001-5720-561110.21105/joss.01442https://doi.org/10.5281/zenodo.3251024R, M4, C++https://joss.theoj.org/papers/10.21105/joss.01442.pdfmicrobiology, microbiome, metagenomics, microbial ecology