tag:joss.theoj.org,2005:/papers/edited_by/@jniJournal of Open Source Software2021-07-18T07:10:15ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/24802021-07-18T07:10:15Z2021-07-19T00:00:14ZTraja: A Python toolbox for animal trajectory analysisacceptedv0.2.52021-03-10 09:10:45 UTC632021-07-18 07:10:15 UTC620213202JustinShenkVisioLab, Berlin, Germany, Radboud University, Nijmegen, Netherlands0000-0002-0664-7337WolfByttnerRapid Health, London, England, United Kingdom0000-0002-9525-9730SaranrajNambusubramaniyanVisioLab, Berlin, Germany0000-0002-7314-0261AlexanderZoellerIndependent researcher0000-0002-4043-342010.21105/joss.03202https://doi.org/10.5281/zenodo.5069231Jupyter Notebook, Pythonhttps://joss.theoj.org/papers/10.21105/joss.03202.pdfanimal behavior, trajectory, multivariate time series, neurosciencetag:joss.theoj.org,2005:Paper/24312021-07-17T16:02:10Z2021-07-18T00:02:35Zcoxeter: A Python package for working with shapesaccepted0.5.02021-02-25 21:22:10 UTC632021-07-17 16:02:10 UTC620213098VyasRamasubramaniDepartment of Chemical Engineering, University of Michigan0000-0001-5181-9532BradleyD.DiceDepartment of Physics, University of Michigan0000-0002-9983-0770TobiasT.DwyerDepartment of Chemical Engineering, University of Michigan0000-0001-6443-7744SharonC.GlotzerDepartment of Chemical Engineering, University of Michigan, Department of Physics, University of Michigan, Biointerfaces Institute, University of Michigan0000-0002-7197-008510.21105/joss.03098https://doi.org/10.5281/zenodo.5106336Python, Jupyter Notebook, GLSLhttps://joss.theoj.org/papers/10.21105/joss.03098.pdfgeometry, physics, materials sciencetag:joss.theoj.org,2005:Paper/18732021-03-04T15:36:19Z2021-03-10T11:14:55ZOff-resonance CorrecTion OPen soUrce Software (OCTOPUS)accepted0.1.42020-07-22 19:16:58 UTC592021-03-04 15:36:19 UTC620212578MarinaManso JimenoDepartment of Biomedical Engineering, Columbia University in the City of New York, USA, Columbia Magnetic Resonance Research Center, Columbia University in the City of New York, USA0000-0002-1141-2049JohnThomasVaughanDepartment of Biomedical Engineering, Columbia University in the City of New York, USA, Columbia Magnetic Resonance Research Center, Columbia University in the City of New York, USA0000-0002-6933-3757SairamGeethanathColumbia Magnetic Resonance Research Center, Columbia University in the City of New York, USA0000-0002-3776-411410.21105/joss.02578https://doi.org/10.5281/zenodo.4574444Pythonhttps://joss.theoj.org/papers/10.21105/joss.02578.pdfMRI, off-resonance correctiontag:joss.theoj.org,2005:Paper/21342021-01-28T13:56:25Z2021-02-15T11:29:48ZCellocity: A Python package for analysis of confluent cell layer dynamicsaccepted1.0.02020-10-28 10:09:34 UTC572021-01-28 13:56:25 UTC620212818JensErikssonScience for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University0000-0002-8945-2665DanielStyrströmDaniel Styrström ConsultingMikaelE.SellinScience for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University0000-0002-8355-080310.21105/joss.02818https://doi.org/10.5281/zenodo.4475442Pythonhttps://joss.theoj.org/papers/10.21105/joss.02818.pdfmicroscopy, dynamics, confluent cell layertag:joss.theoj.org,2005:Paper/20352020-12-14T12:19:03Z2021-02-15T11:29:56ZSIAL: A simple image analysis library for wet-lab scientistsacceptedv1.0.02020-09-17 01:04:09 UTC562020-12-14 12:19:03 UTC520202689DavidR.TyrpakDepartment of Pharmacology and Pharmaceutical Sciences, School of Pharmacy of the University of Southern California0000-0002-2281-6129YaocunLiDepartment of Pharmacology and Pharmaceutical Sciences, School of Pharmacy of the University of Southern CaliforniaSiqiLeiDepartment of Pharmacology and Pharmaceutical Sciences, School of Pharmacy of the University of Southern CaliforniaJ.AndrewMacKayDepartment of Pharmacology and Pharmaceutical Sciences, School of Pharmacy of the University of Southern California, Keck School of Medicine of the University of Southern California, Department of Ophthalmology, Roski Eye Institute, University of Southern California Viterbi School of Engineering, Biomedical Engineering10.21105/joss.02689https://doi.org/10.5281/zenodo.4312250Javahttps://joss.theoj.org/papers/10.21105/joss.02689.pdfImage Analysis, FIJI, ImageJ, reproducbile sciencetag:joss.theoj.org,2005:Paper/19432020-10-15T13:32:17Z2021-02-15T11:30:09ZMinerva: a light-weight, narrative image browser for multiplexed tissue imagesacceptedv1.0.02020-08-13 15:18:25 UTC542020-10-15 13:32:17 UTC520202579JohnHofferLaboratory of Systems Pharmacology, Harvard Medical School, Boston, MA0000-0002-5877-4266RumanaRashidLaboratory of Systems Pharmacology, Harvard Medical School, Boston, MA, Ludwig Center for Cancer Research at Harvard, Harvard Medical School, Boston, MA, Department of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA0000-0001-6986-7209JeremyL.MuhlichLaboratory of Systems Pharmacology, Harvard Medical School, Boston, MA0000-0002-0811-637XYu-AnChenLaboratory of Systems Pharmacology, Harvard Medical School, Boston, MA, Ludwig Center for Cancer Research at Harvard, Harvard Medical School, Boston, MA0000-0001-7228-4696DouglasPeter WilliamRussellMathworks, Natick, MA0000-0001-7446-2353JuhaRuokonenLaboratory of Systems Pharmacology, Harvard Medical School, Boston, MA0000-0002-6381-121XRobertKruegerLaboratory of Systems Pharmacology, Harvard Medical School, Boston, MA, School of Engineering and Applied Sciences, Harvard University, Cambridge, MA0000-0002-6468-8356HanspeterPfisterSchool of Engineering and Applied Sciences, Harvard University, Cambridge, MA0000-0002-3620-2582SandroSantagataLaboratory of Systems Pharmacology, Harvard Medical School, Boston, MA, Ludwig Center for Cancer Research at Harvard, Harvard Medical School, Boston, MA, Department of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA0000-0002-7528-9668PeterK.SorgerLaboratory of Systems Pharmacology, Harvard Medical School, Boston, MA, Ludwig Center for Cancer Research at Harvard, Harvard Medical School, Boston, MA, Department of Systems Biology, Harvard Medical School, Boston, MA0000-0002-3364-183810.21105/joss.02579https://doi.org/10.5281/zenodo.4088741JavaScript, Pythonhttps://joss.theoj.org/papers/10.21105/joss.02579.pdfvisualization, image data, cancer tissue, storytelling