tag:joss.theoj.org,2005:/papers/edited_by/@danielskatzJournal of Open Source Software2024-03-09T21:38:19ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/48522024-03-09T21:38:19Z2024-03-11T01:37:29ZHyperNetX: A Python package for modeling complex network data as hypergraphsacceptedv2.0.52023-10-16 19:38:03 UTC952024-03-09 21:38:19 UTC920246016BrendaPraggastisPacific Northwest National Laboratory, USA0000-0003-1344-0497SinanAksoyPacific Northwest National Laboratory, USA0000-0002-3466-3334DustinArendtPacific Northwest National Laboratory, USA0000-0003-2466-199XMarkBonicilloPacific Northwest National Laboratory, USA0009-0003-9764-2180CliffJoslynPacific Northwest National Laboratory, USA0000-0002-5923-5547EmiliePurvinePacific Northwest National Laboratory, USA0000-0003-2069-5594MadelynShapiroPacific Northwest National Laboratory, USA0000-0002-2786-7056JiYoungYunPacific Northwest National Laboratory, USA10.21105/joss.06016https://doi.org/10.5281/zenodo.10795225Pythonhttps://joss.theoj.org/papers/10.21105/joss.06016.pdfhypergraph, network science, simplicial-complexes, knowledge graph, simplicial-homology, s-linegraph, property hypergraphtag:joss.theoj.org,2005:Paper/30012024-02-29T18:30:52Z2024-03-01T00:00:33ZcppTPSA/pyTPSA: a C++/Python package for truncated power series algebraacceptedv1.0.02021-08-27 20:06:27 UTC942024-02-29 18:30:52 UTC920244818HeZhangThomas Jefferson National Accelerator Facility, Newport News, VA 23606, USA0000-0001-7701-411810.21105/joss.04818https://doi.org/10.5281/zenodo.10728770C++, Pythonhttps://joss.theoj.org/papers/10.21105/joss.04818.pdfdifferential algebra, truncated power series algebra, accelerator physics, astronomy, beam dynamicstag:joss.theoj.org,2005:Paper/49472024-01-24T17:19:02Z2024-02-25T07:02:22ZViash: A meta-framework for building reusable workflow modulesaccepted0.8.12023-11-21 12:26:06 UTC932024-01-24 17:19:02 UTC920246089RobrechtCannoodtData Intuitive, Lebbeke, Belgium, Data Mining and Modelling for Biomedicine group, VIB Center for Inflammation Research, Ghent, Belgium, Department of Applied Mathematics, Computer Science, and Statistics, Ghent University, Ghent, Belgium0000-0003-3641-729XHendrikCannoodtData Intuitive, Lebbeke, Belgium0000-0002-0032-6719DriesSchaumontData Intuitive, Lebbeke, Belgium0000-0002-4389-0440KaiWaldrantData Intuitive, Lebbeke, Belgium0009-0003-8555-1361EricVan de KerckhoveData Intuitive, Lebbeke, BelgiumAndyBoschmansData Intuitive, Lebbeke, Belgium0009-0008-8793-4661DriesDe MaeyerDiscovery Technology and Molecular Pharmacology, Janssen Research & Development, Pharmaceutical Companies of Johnson & Johnson, Beerse, Belgium0000-0002-1314-3348ToniVerbeirenData Intuitive, Lebbeke, Belgium0000-0002-7007-686610.21105/joss.06089https://doi.org/10.5281/zenodo.10563479Scala, Nextflowhttps://joss.theoj.org/papers/10.21105/joss.06089.pdfBioinformatics, Workflows, Software development, Reproducibility, Cloud computing, Dockertag:joss.theoj.org,2005:Paper/47542023-10-24T07:22:19Z2023-10-25T00:00:54ZQiskit Dynamics: A Python package for simulating the time dynamics of quantum systemsaccepted0.4.22023-09-13 16:56:25 UTC902023-10-24 07:22:19 UTC820235853DanielPuzzuoliIBM Quantum, IBM Canada, Vancouver, BC, CanadaChristopherJ.WoodIBM Quantum, IBM T.J. Watson Research Center, Yorktown Heights, NY, USADanielJ.EggerIBM Quantum, IBM Research Europe - Zurich, Ruschlikon, SwitzerlandBenjaminRosandYale University, New Haven, CT, USAKentoUedaIBM Quantum, IBM Research Tokyo, Tokyo, Japan10.21105/joss.05853https://doi.org/10.5281/zenodo.10034642Pythonhttps://joss.theoj.org/papers/10.21105/joss.05853.pdfquantum, quantum computer, pulse, controltag:joss.theoj.org,2005:Paper/47012023-10-16T14:06:34Z2023-10-17T00:00:43ZGridFormat: header-only C++-library for grid file I/Oacceptedv0.12023-08-15 10:30:05 UTC902023-10-16 14:06:34 UTC820235778DennisGläserUniversity of Stuttgart, Germany0000-0001-9646-881XTimoKochUniversity of Oslo, Norway0000-0003-4776-5222BerndFlemischUniversity of Stuttgart, Germany0000-0001-8188-620X10.21105/joss.05778https://doi.org/10.5281/zenodo.10008062C++, Pythonhttps://joss.theoj.org/papers/10.21105/joss.05778.pdfsimulationtag:joss.theoj.org,2005:Paper/45752023-09-11T14:11:18Z2024-03-11T16:25:31Zhdlib: A Python library for designing Vector-Symbolic Architecturesacceptedv0.1.82023-07-03 16:38:24 UTC892023-09-11 14:11:18 UTC820235704FabioCumboGenomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, United States of America0000-0003-2920-5838EmanuelWeitschekDepartment of Engineering, Uninettuno University, Rome, Italy0000-0002-8045-2925DanielBlankenbergGenomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, United States of America, Department of Molecular Medicine, Cleveland Clinic Lerner College of Medicine, Case Western Reserve University, Cleveland, Ohio, United States of America0000-0002-6833-904910.21105/joss.05704https://doi.org/10.5281/zenodo.8331296Pythonhttps://joss.theoj.org/papers/10.21105/joss.05704.pdfVector-Symbolic Architectures, Hyperdimensional Computing, Librarytag:joss.theoj.org,2005:Paper/45892023-08-18T19:47:48Z2023-08-19T08:54:38ZA Java Library for Itemset Mining with Choco-solveracceptedv1.0.22023-07-09 13:14:01 UTC882023-08-18 19:47:48 UTC820235654CharlesVernereyTASC, IMT-Atlantique, LS2N-CNRS, Nantes, France0000-0002-2922-2833SamirLoudniTASC, IMT-Atlantique, LS2N-CNRS, Nantes, France0000-0001-6245-766110.21105/joss.05654https://doi.org/10.5281/zenodo.8263971Javahttps://joss.theoj.org/papers/10.21105/joss.05654.pdfConstraint Programming, Itemset Mining, Multi-Objective Optimisationtag:joss.theoj.org,2005:Paper/41032023-08-14T18:55:46Z2023-08-23T14:25:01ZSciris: Simplifying scientific software in Pythonaccepted2.1.02022-12-24 17:36:09 UTC882023-08-14 18:55:46 UTC820235076CliffC.KerrInstitute for Disease Modeling, Global Health Division, Bill \& Melinda Gates Foundation, Seattle, USA, School of Physics, University of Sydney, Sydney, Australia0000-0003-2517-2354PaulaSanz-LeonInstitute for Disease Modeling, Global Health Division, Bill \& Melinda Gates Foundation, Seattle, USA0000-0002-1545-6380RomeshG.AbeysuriyaInstitute for Disease Modeling, Global Health Division, Bill \& Melinda Gates Foundation, Seattle, USA, Burnet Institute, Melbourne, Australia0000-0002-9618-6457GeorgeL.ChadderdonBurnet Institute, Melbourne, Australia, CAE USA, Tampa, USA0000-0002-3034-2330Vlad-ŞtefanHarbuzSaffron Software, Bucharest, RomaniaParhamSaidiSaffron Software, Bucharest, RomaniaMaria del MarQuirogaBurnet Institute, Melbourne, Australia, Melbourne Data Analytics Platform, The University of Melbourne, Melbourne, Australia0000-0002-8943-2808RowanMartin-HughesBurnet Institute, Melbourne, Australia0000-0002-3724-2412SherrieL.KellyBurnet Institute, Melbourne, Australia0000-0002-6232-5586JamieA.CohenInstitute for Disease Modeling, Global Health Division, Bill \& Melinda Gates Foundation, Seattle, USA0000-0002-8479-1860RobynM.StuartInstitute for Disease Modeling, Global Health Division, Bill \& Melinda Gates Foundation, Seattle, USA, Department of Mathematical Sciences, University of Copenhagen, Copenhagen, Denmark0000-0001-6867-9265AnnaNachesaGoogle, Zürich, Switzerland10.21105/joss.05076https://doi.org/10.5281/zenodo.8245253Pythonhttps://joss.theoj.org/papers/10.21105/joss.05076.pdfpython, scientific software development, computational science, numerical utilities, containers, plottingtag:joss.theoj.org,2005:Paper/44862023-08-12T20:00:20Z2023-08-13T00:01:13ZPyPO: a Python package for Physical Opticsacceptedv1.0.02023-05-16 21:39:31 UTC882023-08-12 20:00:20 UTC820235478ArendMoermanFaculty of Electrical Engineering, Mathematics and Computer Science, Delft University of Technology, Mekelweg 4, 2628 CD, Delft, The Netherlands0000-0002-0475-6134MaikelH.GafajiThe Hague University of Applied Sciences, Johanna Westerdijkplein 75, 2521 EN, The Hague, The NetherlandsKenichiKaratsuFaculty of Electrical Engineering, Mathematics and Computer Science, Delft University of Technology, Mekelweg 4, 2628 CD, Delft, The Netherlands, SRON—Netherlands Institute for Space Research, Niels Bohrweg 4, 2333 CA, Leiden, The Netherlands0000-0003-4562-5584AkiraEndoFaculty of Electrical Engineering, Mathematics and Computer Science, Delft University of Technology, Mekelweg 4, 2628 CD, Delft, The Netherlands0000-0003-0379-234110.21105/joss.05478https://doi.org/10.5281/zenodo.8241427Python, C++, Cudahttps://joss.theoj.org/papers/10.21105/joss.05478.pdfPhysical Optics, Geometrical Optics, Reflectors, CUDAtag:joss.theoj.org,2005:Paper/44662023-07-19T18:21:11Z2023-07-20T00:01:39Zshmem4py: OpenSHMEM for Pythonacceptedv0.12023-05-02 19:53:20 UTC872023-07-19 18:21:11 UTC820235444MarcinRogowskiKing Abdullah University of Science and Technology, Saudi Arabia0000-0002-5662-2082LisandroDalcinKing Abdullah University of Science and Technology, Saudi Arabia0000-0001-8086-0155JeffR.HammondNVIDIA Helsinki Oy, Finland0000-0003-3181-8190DavidE.KeyesKing Abdullah University of Science and Technology, Saudi Arabia0000-0002-4052-722410.21105/joss.05444https://doi.org/10.5281/zenodo.8143862Python, Chttps://joss.theoj.org/papers/10.21105/joss.05444.pdfPGAS, OpenSHMEM, shared memory, High Performance Computing