tag:joss.theoj.org,2005:/papers/edited_by/@brainstorm?page=2Journal of Open Source Software2019-02-11T23:18:45ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/8132019-02-11T23:18:45Z2021-02-15T11:32:39ZThe Biddy BDD packageacceptedv1.8.22019-01-15 09:37:54 UTC342019-02-11 23:18:45 UTC420191189RobertMeolicFaculty of Electrical Engineering and Computer Science, University of Maribor0000-0003-3395-122710.21105/joss.01189https://doi.org/10.5281/zenodo.2561641C, Tcl, C++, HyPhyhttps://joss.theoj.org/papers/10.21105/joss.01189.pdfBoolean algebra, unate cube set algebra, binary decision diagram, zero-suppressed binary decision diagram, formal methods, free softwaretag:joss.theoj.org,2005:Paper/8042019-02-10T11:19:07Z2021-02-15T11:32:41ZMultiblock PLS: Block dependent prediction modeling for Pythonacceptedv1.0.02019-01-06 20:42:11 UTC342019-02-10 11:19:07 UTC420191190AndreasBaumDepartment of Applied Mathematics and Computer Science, Technical University of Denmark, Richard Petersens Plads 324, DK-2800 Kgs. Lyngby, Denmark0000-0003-1552-0220LaurentVermueDepartment of Applied Mathematics and Computer Science, Technical University of Denmark, Richard Petersens Plads 324, DK-2800 Kgs. Lyngby, Denmark0000-0002-3403-762410.21105/joss.01190https://doi.org/10.5281/zenodo.2560303Pythonhttps://joss.theoj.org/papers/10.21105/joss.01190.pdfmultivariate statistics, data fusion, latent variables, exploratory analysis, data integration, MB-PLStag:joss.theoj.org,2005:Paper/7472019-01-31T14:14:52Z2021-02-15T11:32:44Zpytransform3d: 3D Transformations for Pythonaccepted1.02018-12-07 15:18:49 UTC332019-01-31 14:14:52 UTC420191159AlexanderFabischRobotics Innovation Center, DFKI GmbH0000-0003-2824-795610.21105/joss.01159https://doi.org/10.5281/zenodo.2553451Pythonhttps://joss.theoj.org/papers/10.21105/joss.01159.pdftransformationstag:joss.theoj.org,2005:Paper/5932018-12-11T12:39:04Z2021-02-15T11:33:05Zidpflex: Analysis of Intrinsically Disordered Proteins by Comparing Simulations to Small Angle Scattering Experimentsacceptedv0.1.52018-08-15 15:39:58 UTC322018-12-11 12:39:04 UTC320181007JoseM.BorregueroNeutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge TN, USA0000-0002-0866-8158FahimaIslamNeutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge TN, USA0000-0002-0265-0256UtsabR.ShresthaBiosciences Division, Oak Ridge National Laboratory, Oak Ridge TN, USA.0000-0001-6985-6657LoukasPetridisBiosciences Division, Oak Ridge National Laboratory, Oak Ridge TN, USA.0000-0001-8569-060X10.21105/joss.01007https://doi.org/10.5281/zenodo.2179293Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.01007.pdfsans, neutron scattering, saxs, intrinsically disoreded proteins, simulations, molecular dynamicstag:joss.theoj.org,2005:Paper/7182018-11-13T15:57:58Z2021-02-15T11:32:50Zhotsub: A batch job engine for cloud services with ETL frameworkacceptedv0.10.02018-11-04 11:18:12 UTC312018-11-13 15:57:58 UTC320181069HiromuOchiaiNational Cancer Center Research Institute, Tokyo, Japan0000-0001-6636-856XKenichiChibaNational Cancer Center Research Institute, Tokyo, JapanAiOkadaNational Cancer Center Research Institute, Tokyo, Japan0000-0002-9782-5900YuichiShiraishiNational Cancer Center Research Institute, Tokyo, Japan0000-0001-6144-584510.21105/joss.01069https://doi.org/10.5281/zenodo.1482983Go, JavaScript, wdlhttps://joss.theoj.org/papers/10.21105/joss.01069.pdfcloud, Docker, AWS, GCP, ETLtag:joss.theoj.org,2005:Paper/5922018-10-12T12:04:13Z2021-02-15T11:33:05Zcompboost: Modular Framework for Component-Wise Boostingacceptedv0.1.02018-08-14 21:43:59 UTC302018-10-12 12:04:13 UTC32018967DanielSchalkDepartment of Statistics, LMU Munich0000-0003-0950-1947JanekThomasDepartment of Statistics, LMU Munich0000-0003-4511-6245BerndBischlDepartment of Statistics, LMU Munich0000-0001-6002-698010.21105/joss.00967https://doi.org/10.5281/zenodo.1460435R, Jupyter Notebook, C++, Rebolhttps://joss.theoj.org/papers/10.21105/joss.00967.pdfmachine learning, boostingtag:joss.theoj.org,2005:Paper/4622018-05-07T11:01:43Z2021-02-15T11:33:28Zmalan: MAle Lineage ANalysisacceptedv0.0.32018-04-16 10:33:14 UTC252018-05-07 11:01:43 UTC32018684MikkelMeyerAndersenDepartment of Mathematical Sciences, Aalborg University, Denmark0000-0002-0234-026610.21105/joss.00684https://doi.org/10.5281/zenodo.1241769R, C++https://joss.theoj.org/papers/10.21105/joss.00684.pdfY-chromosome, forensic genetics, lineage markers, population genetics, weight of evidencetag:joss.theoj.org,2005:Paper/4252018-04-10T14:39:14Z2021-02-15T11:33:35ZmicroPIECE - microRNA pipeline enhanced by CLIP experimentsacceptedv1.0.02018-03-05 02:40:30 UTC242018-04-10 14:39:14 UTC32018616DanielAmselFraunhofer Institute for Molecular Biology and Applied Ecology, Department of Bioresources, Winchester Str. 2, 35394 Giessen, Germany0000-0002-0512-9802AndréBillionFraunhofer Institute for Molecular Biology and Applied Ecology, Department of Bioresources, Winchester Str. 2, 35394 Giessen, Germany0000-0002-5073-3347AndreasVilcinskasFraunhofer Institute for Molecular Biology and Applied Ecology, Department of Bioresources, Winchester Str. 2, 35394 Giessen, Germany, Institute for Insect Biotechnology, Heinrich-Buff-Ring 26-32, 35392 Giessen, Germany0000-0001-8276-4968FrankFörsterFraunhofer Institute for Molecular Biology and Applied Ecology, Department of Bioresources, Winchester Str. 2, 35394 Giessen, Germany0000-0003-4166-542310.21105/joss.00616https://doi.org/10.5281/zenodo.1218731Perlhttps://joss.theoj.org/papers/10.21105/joss.00616.pdfCLIP-seq, microRNA, target prediction, homology, insectomicstag:joss.theoj.org,2005:Paper/2802017-10-25T00:00:00Z2021-02-15T11:33:54ZENASearch: A Python library for interacting with ENA's APIaccepted0.1.12017-09-12 15:04:35 UTC182017-10-25 00:00:00 UTC22017418BéréniceBatutBioinformatics group, Freiburg, Germany0000-0001-9852-1987BjörnGrüningBioinformatics group, Freiburg, Germany0000-0002-3079-658610.21105/joss.00418https://doi.org/10.5281/zenodo.1034619Pythonhttps://joss.theoj.org/papers/10.21105/joss.00418.pdfEuropean Nucleotide Archive, API, REST, Galaxytag:joss.theoj.org,2005:Paper/1702017-08-27T00:00:00Z2021-02-15T11:34:12ZVaristran: Anscombe's variance stabilizing transformation for RNA-seq gene expression dataacceptedv1.0.12017-03-13 04:38:01 UTC162017-08-27 00:00:00 UTC22017257PaulFrancisHarrisonMonash Bioinformatics Platform, Monash University0000-0002-3980-268X10.21105/joss.00257https://doi.org/10.5281/zenodo.846925Rhttps://joss.theoj.org/papers/10.21105/joss.00257.pdfRNA-seq, gene expression, variance stabilizing transformation, R package