tag:joss.theoj.org,2005:/papers/edited_by/@arokemJournal of Open Source Software2022-04-25T17:11:15ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/23742022-04-25T17:11:15Z2022-04-26T00:00:57ZLogodetect: One-shot detection of logos in image and video dataacceptedv0.12021-02-06 18:10:45 UTC722022-04-25 17:11:15 UTC720223124JorgeDavila-ChaconHeldenkombinat Technologies GmbHMaxPumperlaIUBH Internationale Hochschule, Pathmind Inc.10.21105/joss.03124https://doi.org/10.5281/zenodo.6483152Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.03124.pdfobject detection, object recognition, computer vision, image processing, video processing, one-shot learningtag:joss.theoj.org,2005:Paper/26212021-07-01T04:49:26Z2021-07-02T00:01:30ZDataLad: distributed system for joint management of code, data, and their relationshipaccepted0.14.32021-05-03 19:52:41 UTC632021-07-01 04:49:26 UTC620213262YaroslavO.HalchenkoCenter for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USA0000-0003-3456-2493KyleMeyerCenter for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USABenjaminPoldrackInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany0000-0001-7628-0801DebanjumSinghSolankyCenter for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USA0000-0002-0774-6564AdinaS.WagnerInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany0000-0003-2917-3450JasonGorsCenter for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USADaveMacFarlaneMcGill Center for Integrative Neuroscience, Montreal, CanadaDorianPustinaCHDI Management/CHDI Foundation, Princeton, NJ, USA0000-0002-2834-7220VanessaSochatLawrence Livermore National Lab, Livermore, CA, USA0000-0002-4387-3819SatrajitS.GhoshMassachusetts Institute of Technology, Cambridge, MA, USA0000-0002-5312-6729ChristianMönchInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany0000-0002-3092-0612ChristopherJ.MarkiewiczStanford University, Stanford, CA, USA0000-0002-6533-164XLauraWaiteInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany0000-0003-2213-7465IlyaShlyakhterQuest Diagnostics, Marlborough, MA, USA0000-0002-9854-5118Alejandrode la VegaThe University of Austin at Austin, Austin, TX, USA0000-0001-9062-3778SoichiHayashiIndiana University, Bloomington, IN, USA0000-0003-3641-3491ChristianOlafHäuslerInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany, Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University Düsseldorf, Düsseldorf, Germany0000-0002-0936-317XJean-BaptistePolineFaculty of Medicine and Health Sciences, McConnell Brain Imaging Center, McGill University, Montreal, Canada0000-0002-9794-749XTobiasKadelkaInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany0000-0002-0152-3490KustiSkyténUniversity of Oslo, Oslo, Norway0000-0001-7460-1157DorotaJareckaMassachusetts Institute of Technology, Cambridge, MA, USA0000-0001-8282-2988DavidKennedyUniversity of Massachusetts Medical School, Worcester, MA, USA0000-0002-9377-0797TedStraussMontreal Neurological Institute, McGill University, Montreal, Canada0000-0002-1927-666XMattCieslakUniversity of Pennsylvania, Philadelphia, PA0000-0002-1931-4734PeterVavraDepartment of Biological Psychology, Otto-von-Guericke-University Magdeburg, Magdeburg, Germany0000-0001-8432-5459Horea-IoanIoanasDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, USA0000-0001-7037-2449RobinSchneiderIndependent Developer, Germany0000-0003-1952-5459MikaPflügerPotsdam Institute for Climate Impact Research (PIK) e. V., Potsdam, Germany0000-0002-7814-8916JamesV.HaxbyCenter for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USASimonB.EickhoffInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany, Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University Düsseldorf, Düsseldorf, Germany0000-0001-6363-2759MichaelHankeInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany, Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University Düsseldorf, Düsseldorf, Germany0000-0001-6398-637010.21105/joss.03262https://doi.org/10.5281/zenodo.5034875https://joss.theoj.org/papers/10.21105/joss.03262.pdfPython, command line, version control, data management, data distribution, data provenance, reproducibilitytag:joss.theoj.org,2005:Paper/21272021-02-21T10:47:00Z2021-02-22T00:01:22ZMiTfAT: A Python-based Analysis Tool for Molecular fMRI Experiments.acceptedv0.1.72020-10-23 14:24:51 UTC582021-02-21 10:47:00 UTC620212827VahidS.BokharaieMax Planck Institute for Biological Cybernetics, Tuebingen, Germany0000-0001-6544-796010.21105/joss.02827https://doi.org/10.5281/zenodo.4543316Pythonhttps://joss.theoj.org/papers/10.21105/joss.02827.pdfComputational Neuroscience, fMRI Analysis, Machine Learning, Time-Series Analysistag:joss.theoj.org,2005:Paper/19492020-10-20T17:41:16Z2021-02-15T11:30:07ZrFBP: Replicated Focusing Belief Propagation algorithmacceptedv1.0.02020-08-19 15:06:29 UTC542020-10-20 17:41:16 UTC520202663NicoCurtieDIMESLab, Department of Experimental, Diagnostic and Specialty Medicine of Bologna University0000-0001-5802-1195DanieleDall'OlioDepartment of Physics and Astronomy of Bologna University0000-0003-0196-6870DanielRemondiniDepartment of Physics and Astronomy of Bologna University0000-0003-3185-7456GastoneCastellaniDepartment of Experimental, Diagnostic and Specialty Medicine of Bologna University0000-0003-4892-925XEnricoGiampierieDIMESLab, Department of Experimental, Diagnostic and Specialty Medicine of Bologna University0000-0003-2269-233810.21105/joss.02663https://doi.org/10.5281/zenodo.4106174Python, C++, PowerShellhttps://joss.theoj.org/papers/10.21105/joss.02663.pdfbelief-propagation, deep-neural-networks, sping-glass, statistical-mechanics, learning-algorithm, machine-learning-algorithms, python3, cpp17tag:joss.theoj.org,2005:Paper/12112020-05-19T10:48:52Z2021-02-15T11:31:38ZFAT Forensics: A Python Toolbox for Implementing and
Deploying Fairness, Accountability and Transparency
Algorithms in Predictive Systemsaccepted0.0.12019-09-12 18:40:55 UTC492020-05-19 10:48:52 UTC520201904KacperSokolDepartment of Computer Science, University of Bristol0000-0002-9869-5896AlexanderHepburnDepartment of Engineering Mathematics, University of BristolRafaelPoyiadziDepartment of Engineering Mathematics, University of BristolMatthewCliffordDepartment of Engineering Mathematics, University of BristolRaulSantos-RodriguezDepartment of Engineering Mathematics, University of Bristol0000-0001-9576-3905PeterFlachDepartment of Computer Science, University of Bristol0000-0001-6857-581010.21105/joss.01904https://doi.org/10.5281/zenodo.3833199Pythonhttps://joss.theoj.org/papers/10.21105/joss.01904.pdfFairness, Accountability, Transparency, Artificial Intelligence, Machine Learning, Software, Python Toolboxtag:joss.theoj.org,2005:Paper/14262020-03-20T11:18:06Z2021-02-15T11:31:11ZpyGOURGS - global optimization of n-ary tree representable problems using uniform random global searchaccepted0.12020-01-02 22:55:01 UTC472020-03-20 11:18:06 UTC520202074SohrabTowfighiFaculty of Medicine, University of Toronto0000-0002-3050-894310.21105/joss.02074https://doi.org/10.5281/zenodo.3710475Pythonhttps://joss.theoj.org/papers/10.21105/joss.02074.pdfGlobal Optimization, Heuristic Optimization, Genetic Programming, Random Searchtag:joss.theoj.org,2005:Paper/13792020-03-01T23:43:39Z2021-02-15T11:31:19ZPyglmnet: Python implementation of elastic-net regularized generalized linear modelsacceptedv1.12019-11-26 03:54:41 UTC472020-03-01 23:43:39 UTC520201959MainakJasMassachusetts General Hospital, Harvard Medical School0000-0002-3199-9027TitipatAchakulvisutUniversity of Pennsylvania0000-0002-2124-2979AidIdrizovićLoyola UniversityDanielAcunaUniversity of SyracuseMatthewAntalekNorthwestern UniversityViniciusMarquesLoyola UniversityTommyOdlandSonat ConsultingRaviPrakashGargNorthwestern UniversityMayankAgrawalPrinceton UniversityYuUmegakiNTT DATA Mathematical Systems IncPeterFoley6050000-0002-0304-7213HugoFernandesRockets of Awesome0000-0002-0168-4104DrewHarrisEpoch CapitalBeibinLiUniversity of WashingtonOlivierPietersIDLab-AIRO -- Ghent University -- imec, Research Institute for Agriculture, Fisheries and Food0000-0002-5473-4849ScottOttersonClean Power ResearchGiovanniDe ToniUniversity of Trento0000-0002-8387-9983ChrisRodgersColumbia University0000-0003-1762-3450EvaDyerGeorgia TechMattiHamalainenMassachusetts General Hospital, Harvard Medical SchoolKonradKordingUniversity of PennsylvaniaPavanRamkumarSystem1 Biosciences Inc0000-0001-7450-072710.21105/joss.01959https://doi.org/10.5281/zenodo.3686564Pythonhttps://joss.theoj.org/papers/10.21105/joss.01959.pdfglm, machine-learning, lasso, elastic-net, group-lassotag:joss.theoj.org,2005:Paper/13042020-01-27T16:20:28Z2021-02-15T11:31:28Zmiet: an R package for region of interest analysis from magnetic reasonance imagesaccepted0.1.02019-10-29 10:20:40 UTC452020-01-27 16:20:28 UTC520201862BenoitCombèsEmpenn INSERM - Institut National de la Santé et de la Recherche Médicale, Inria Rennes – Bretagne Atlantique , IRISA_D5 - SIGNAUX ET IMAGES NUMÉRIQUES, ROBOTIQUE0000-0003-4161-709310.21105/joss.01862https://doi.org/10.5281/zenodo.3626693Rhttps://joss.theoj.org/papers/10.21105/joss.01862.pdfMRI, medical imaging, statisticstag:joss.theoj.org,2005:Paper/13182019-12-18T14:40:14Z2021-02-15T11:31:25ZMNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysisacceptedv0.32019-11-04 17:26:29 UTC442019-12-18 14:40:14 UTC420191896StefanAppelhoffCenter for Adaptive Rationality, Max Planck Institute for Human Development, Berlin, Germany0000-0001-8002-0877MatthewSandersonDepartment of Cognitive Sciences, Macquarie University, Sydney, Australia0000-0002-4645-8979TeonL.BrooksMozilla0000-0001-7344-3230Marijnvan VlietDepartment of Neuroscience and Biomedical Engineering, Aalto University, Espoo, Finland0000-0002-6537-6899RomainQuentinHuman Cortical Physiology and Neurorehabilitation Section, NINDS, NIH, Bethesda, Maryland 208920000-0001-7659-3605ChrisHoldgrafUC Berkeley, Project Jupyter0000-0002-2391-0678MaximilienChaumonInstitut du cerveau et de la moelle épinière (ICM), Paris, France0000-0001-9664-8861EzequielMikulanDepartment of Biomedical and Clinical Sciences 'L. Sacco', University of Milan, Milan, Italy0000-0001-7259-6120KambizTavabiInstitute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA0000-0003-1881-892XRichardHöchenbergerInstitute of Neuroscience and Medicine (INM-3), Research Center Jülich, Germany0000-0002-0380-4798DominikWelkeMax-Planck-Institute for Empirical Aesthetics, Frankfurt a.M., Germany0000-0002-5529-1998ClemensBrunnerInstitute of Psychology, University of Graz, Austria0000-0002-6030-2233AlexanderP.RockhillUniversity of Oregon, Eugene OR, USA0000-0003-3868-7453EricLarsonInstitute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA0000-0003-4782-5360AlexandreGramfortUniversité Paris-Saclay, Inria, CEA, Palaiseau, France0000-0001-9791-4404MainakJasAthinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, USA0000-0002-3199-902710.21105/joss.01896https://doi.org/10.5281/zenodo.3580273Pythonhttps://joss.theoj.org/papers/10.21105/joss.01896.pdfBIDS, MNE, neuroimaging, MEG, EEG, iEEGtag:joss.theoj.org,2005:Paper/11202019-11-25T17:45:10Z2021-02-15T11:31:55ZVirtual Scanner: MRI on a Browseraccepted1.0.02019-07-22 14:21:18 UTC432019-11-25 17:45:10 UTC420191637GehuaTongColumbia Magnetic Resonance Research Center, Columbia University in the City of New York, New York, NY, USA0000-0001-6263-762XSairamGeethanathColumbia Magnetic Resonance Research Center, Columbia University in the City of New York, New York, NY, USA0000-0002-3776-4114MarinaMansoJimenoColumbia Magnetic Resonance Research Center, Columbia University in the City of New York, New York, NY, USA0000-0002-1141-2049EnlinQianColumbia Magnetic Resonance Research Center, Columbia University in the City of New York, New York, NY, USA0000-0001-7531-1274KeerthiSravanRaviColumbia Magnetic Resonance Research Center, Columbia University in the City of New York, New York, NY, USA0000-0001-6886-0101NishikaGirishPlum Grove Junior High, Palatine, IL, USAJohnThomasVaughanColumbia Magnetic Resonance Research Center, Columbia University in the City of New York, New York, NY, USA0000-0002-6933-375710.21105/joss.01637https://doi.org/10.5281/zenodo.3550315JavaScript, Pythonhttps://joss.theoj.org/papers/10.21105/joss.01637.pdfAccessible Magnetic Resonance Imaging, Web Application, Pulseq