tag:joss.theoj.org,2005:/papers/by/Yang%20LiJournal of Open Source Software2024-01-06T16:43:17ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/44972024-01-06T16:43:17Z2024-01-30T20:19:57ZQuantEcon.py: A community based Python library for quantitative economicsacceptedv0.7.02023-05-20 09:28:42 UTC932024-01-06 16:43:17 UTC920245585QuentinBatistaMassachusetts Institute of TechnologyChaseColemanNew York UniversityYuyaFurusawaCrop.incShuHuThe Australian National UniversitySmitLunagariyaIndian Institute of Technology (BHU), VaranasiSpencerLyonNew York UniversityMatthewMcKayThe Australian National UniversityDaisukeOyamaUniversity of TokyoThomasJ.SargentNew York UniversityZejinShiThe University of ArizonaJohnStachurskiThe Australian National UniversityPabloWinantESCP Business School and Ecole PolytechniqueNatashaWatkinsThe Australian National UniversityZiyueYangThe Australian National UniversityHengchengZhangThe Australian National University10.21105/joss.05585https://doi.org/10.5281/zenodo.10345102Pythonhttps://joss.theoj.org/papers/10.21105/joss.05585.pdfEconomicstag:joss.theoj.org,2005:Paper/34332022-12-15T20:02:32Z2022-12-16T00:01:07ZDIANNA: Deep Insight And Neural Network Analysisacceptedv.0.4.02022-03-22 16:05:29 UTC802022-12-15 20:02:32 UTC720224493ElenaRanguelovaNetherlands eScience Center, Amsterdam, the Netherlands0000-0002-9834-1756ChristiaanMeijerNetherlands eScience Center, Amsterdam, the Netherlands0000-0002-5529-5761LeonOostrumNetherlands eScience Center, Amsterdam, the Netherlands0000-0001-8724-8372YangLiuNetherlands eScience Center, Amsterdam, the Netherlands0000-0002-1966-8460PatrickBosNetherlands eScience Center, Amsterdam, the Netherlands0000-0002-6033-960XGiuliaCrocioniNetherlands eScience Center, Amsterdam, the Netherlands0000-0002-0823-0121MatthieuLaneuvilleSURF, Amsterdam, the Netherlands0000-0001-6022-0046BryanCardenasGuevaraSURF, Amsterdam, the Netherlands0000-0001-9793-910XRenaBakhshiNetherlands eScience Center, Amsterdam, the Netherlands0000-0002-2932-3028DamianPodareanuSURF, Amsterdam, the Netherlands0000-0002-4207-872510.21105/joss.04493https://doi.org/10.5281/zenodo.7387004Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.04493.pdfexplainable AI, Deep Neural Networks, ONNX, benchmark datasetstag:joss.theoj.org,2005:Paper/35202022-09-29T19:24:38Z2022-10-11T07:33:56Zsmol: A Python package for cluster expansions and beyondacceptedv0.0.12022-04-27 17:23:30 UTC772022-09-29 19:24:38 UTC720224504LuisBarroso-LuqueDepartment of Materials Science and Engineering, University of California Berkeley, Berkeley CA, 94720, USA, Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley CA, 94720, USA0000-0002-6453-9545JuliaH.YangDepartment of Materials Science and Engineering, University of California Berkeley, Berkeley CA, 94720, USA, Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley CA, 94720, USA0000-0002-5713-2288FengyuXieDepartment of Materials Science and Engineering, University of California Berkeley, Berkeley CA, 94720, USA, Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley CA, 94720, USA0000-0002-1169-1690TinaChenDepartment of Materials Science and Engineering, University of California Berkeley, Berkeley CA, 94720, USA, Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley CA, 94720, USA0000-0003-0254-8339RonaldL.KamDepartment of Materials Science and Engineering, University of California Berkeley, Berkeley CA, 94720, USA, Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley CA, 94720, USAZinabJadidiDepartment of Materials Science and Engineering, University of California Berkeley, Berkeley CA, 94720, USA, Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley CA, 94720, USAPeichenZhongDepartment of Materials Science and Engineering, University of California Berkeley, Berkeley CA, 94720, USA, Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley CA, 94720, USA0000-0003-1921-1628GerbrandCederDepartment of Materials Science and Engineering, University of California Berkeley, Berkeley CA, 94720, USA, Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley CA, 94720, USA0000-0001-9275-360510.21105/joss.04504https://doi.org/10.5281/zenodo.7115050Python, Cythonhttps://joss.theoj.org/papers/10.21105/joss.04504.pdfcomputational materials science, lattice models, cluster expansion method, Monte Carlotag:joss.theoj.org,2005:Paper/25932021-12-10T01:52:14Z2021-12-11T00:01:50ZOmnizart: A General Toolbox for Automatic Music Transcriptionacceptedv0.3.22021-04-24 02:10:31 UTC682021-12-10 01:52:14 UTC620213391Yu-TeWuMusic and Culture Technology Lab, Institute of Information Science, Academia Sinica, Taipei, TaiwanYin-JyunLuoMusic and Culture Technology Lab, Institute of Information Science, Academia Sinica, Taipei, TaiwanTsung-PingChenMusic and Culture Technology Lab, Institute of Information Science, Academia Sinica, Taipei, TaiwanI-ChiehWeiMusic and Culture Technology Lab, Institute of Information Science, Academia Sinica, Taipei, TaiwanJui-YangHsuMusic and Culture Technology Lab, Institute of Information Science, Academia Sinica, Taipei, TaiwanYi-ChinChuangMusic and Culture Technology Lab, Institute of Information Science, Academia Sinica, Taipei, TaiwanLiSuMusic and Culture Technology Lab, Institute of Information Science, Academia Sinica, Taipei, Taiwan10.21105/joss.03391https://doi.org/10.5281/zenodo.5769022Pythonhttps://joss.theoj.org/papers/10.21105/joss.03391.pdfautomatic music transcription, music information retrieval, audio signal processing, artificial intelligencetag:joss.theoj.org,2005:Paper/26162021-12-09T00:38:39Z2021-12-10T00:02:10ZConTEXT Explorer: a web-based text analysis tool for exploring and visualizing concepts across timeacceptedv1.02021-05-03 00:53:56 UTC682021-12-09 00:38:39 UTC620213347ZiyingYangUniversity of Melbourne0000-0001-7705-3280GosiaMikolajczakUniversity of Melbourne0000-0002-7386-4155AndrewTurpinUniversity of Melbourne10.21105/joss.03347https://doi.org/10.5281/zenodo.5762642Pythonhttps://joss.theoj.org/papers/10.21105/joss.03347.pdfDash, Data Analysis, Data Visulizationtag:joss.theoj.org,2005:Paper/26192021-06-08T18:25:11Z2021-06-09T14:52:22Zlenstronomy II: A gravitational lensing software ecosystemacceptedv1.8.12021-05-03 14:43:40 UTC622021-06-08 18:25:11 UTC620213283SimonBirrerKavli Institute for Particle Astrophysics and Cosmology and Department of Physics, Stanford University, Stanford, CA 94305, USA, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA0000-0003-3195-5507AnowarJ.ShajibDepartment of Astronomy & Astrophysics, University of Chicago, Chicago, IL 60637, USA, Department of Physics and Astronomy, University of California, Los Angeles, CA 90095, USA0000-0002-5558-888XDanielGilmanDepartment of Astronomy and Astrophysics, University of Toronto, 50 St. George Street, Toronto, ON, M5S 3H4, Canada0000-0002-5116-7287AymericGalanInstitute of Physics, Laboratory of Astrophysics, Ecole Polytechnique Fédérale de Lausanne (EPFL), Switzerland0000-0003-2547-9815JelleAalbersKavli Institute for Particle Astrophysics and Cosmology and Department of Physics, Stanford University, Stanford, CA 94305, USA, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA0000-0003-0030-0030MartinMillonInstitute of Physics, Laboratory of Astrophysics, Ecole Polytechnique Fédérale de Lausanne (EPFL), Switzerland0000-0001-7051-497XRobertMorganPhysics Department, University of Wisconsin-Madison, 1150 University Avenue Madison, WI 53706, USA, Legacy Survey of Space and Time Corporation Data Science Fellowship Program, USA0000-0002-7016-5471GiuliaPaganoIndependent Researcher0000-0002-3636-0767JiWonParkKavli Institute for Particle Astrophysics and Cosmology and Department of Physics, Stanford University, Stanford, CA 94305, USA, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA0000-0002-0692-1092LucaTeodoriWeizmann Institute, 234 Herzl Street, Rehovot, 7610001 IsraelNicolasTessoreDepartment of Physics and Astronomy, University College London, Gower Street, London, WC1E 6BT, UK0000-0002-9696-7931MadisonUelandKavli Institute for Particle Astrophysics and Cosmology and Department of Physics, Stanford University, Stanford, CA 94305, USALyneVan de VyvereSTAR Institute, Université de Liège, Quartier Agora - Allée du six Août, 19c, B-4000 Liège, Belgium0000-0002-0585-4203SebastianWagner-CarenaKavli Institute for Particle Astrophysics and Cosmology and Department of Physics, Stanford University, Stanford, CA 94305, USA, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA0000-0001-5039-1685EwoudWempeKapteyn Astronomical Institute, University of Groningen, PO Box 800, 9700 AV Groningen, the Netherlands0000-0001-8232-4188LilanYangSchool of Physics and Technology, Wuhan University, Wuhan 430072, China0000-0002-8434-880XXuhengDingKavli IPMU (WPI), UTIAS, The University of Tokyo, Kashiwa, Chiba 277-8583, Japan0000-0001-8917-2148ThomasSchmidtDepartment of Physics and Astronomy, University of California, Los Angeles, CA 90095, USA0000-0002-2772-8160DominiqueSluseSTAR Institute, Université de Liège, Quartier Agora - Allée du six Août, 19c, B-4000 Liège, Belgium0000-0001-6116-2095MingZhangXinjiang Astronomical Observatory, Chinese Academy of Sciences, 150 Science 1-Street, Urumqi 831001, ChinaAdamAmaraInstitute of Cosmology and Gravitation, University of Portsmouth, Portsmouth PO1 3FX, UK0000-0003-3481-349110.21105/joss.03283https://doi.org/10.5281/zenodo.4913700Ruby, Pythonhttps://joss.theoj.org/papers/10.21105/joss.03283.pdfastronomy, gravitational lensing, image simulations, dynamicstag:joss.theoj.org,2005:Paper/21402021-06-01T09:00:27Z2021-06-02T00:01:18Znetrd: A library for network reconstruction and graph distancesacceptedv0.2.22020-10-29 22:43:37 UTC622021-06-01 09:00:27 UTC620212990StefanMcCabeNetwork Science Institute, Northeastern University, Boston, MA, USA0000-0002-7180-145XLeoTorresNetwork Science Institute, Northeastern University, Boston, MA, USA0000-0002-2675-2775TimothyLaRockNetwork Science Institute, Northeastern University, Boston, MA, USA0000-0003-0801-3917SyedArefinulHaqueNetwork Science Institute, Northeastern University, Boston, MA, USA0000-0002-8371-2366Chia-HungYangNetwork Science Institute, Northeastern University, Boston, MA, USA0000-0002-4936-808XHarrisonHartleNetwork Science Institute, Northeastern University, Boston, MA, USA0000-0002-0917-6112BrennanKleinNetwork Science Institute, Northeastern University, Boston, MA, USA, Laboratory for the Modeling of Biological and Socio-Technical Systems, Northeastern University, Boston, USA0000-0001-8326-504410.21105/joss.02990https://doi.org/10.5281/zenodo.4885375Pythonhttps://joss.theoj.org/papers/10.21105/joss.02990.pdfnetwork science, network reconstruction, graph distance, network dynamicstag:joss.theoj.org,2005:Paper/20362021-02-21T12:05:13Z2021-02-22T00:01:28ZThe Pencil Code, a modular MPI code for partial differential equations and particles: multipurpose and multiuser-maintainedacceptedv2020.08.062020-09-17 02:59:38 UTC582021-02-21 12:05:13 UTC620212807ThePencil CodeCollaborationNordita, KTH Royal Institute of Technology and Stockholm University, SwedenAxelBrandenburgNordita, KTH Royal Institute of Technology and Stockholm University, Sweden, Department of Astronomy, Stockholm University, Sweden, McWilliams Center for Cosmology & Department of Physics, Carnegie Mellon University, PA, USA0000-0002-7304-021XAndersJohansenGLOBE Institute, University of Copenhagen, Denmark0000-0002-5893-6165PhilippeA.BourdinSpace Research Institute, Graz, Austria, Institute of Physics, University of Graz, Graz, Austria0000-0002-6793-601XWolfgangDoblerBruker, Potsdam, GermanyWladimirLyraNew Mexico State University, Department of Astronomy, Las Cruces, NM, USA0000-0002-3768-7542MatthiasRheinhardtAstroinformatics, Department of Computer Science, Aalto University, FinlandSvenBingertGesellschaft für wissenschaftliche Datenverarbeitung mbH Göttingen, Germany0000-0001-9547-1582NilsErland L.HaugenSINTEF Energy Research, Trondheim, Norway, Norwegian University of Science and Technology, Norway, Nordita, KTH Royal Institute of Technology and Stockholm University, Sweden0000-0002-9184-8722AntonyMeeBank of America Merrill Lynch, London, UKFrederickGentAstroinformatics, Department of Computer Science, Aalto University, Finland, School of Mathematics, Statistics and Physics, Newcastle University, UK0000-0002-1331-2260NataliaBabkovskaiaNo current affiliationChao-ChinYangUniversity of Nevada, Las Vegas, USA0000-0003-2589-5034TobiasHeinemannNiels Bohr International Academy, Denmark0000-0002-2476-9733BorisDintransCINES, Montpellier, FranceDhrubadityaMitraNordita, KTH Royal Institute of Technology and Stockholm University, Sweden0000-0003-4861-8152SimonCandelaresiSchool of Mathematics and Statistics, University of Glasgow, UK0000-0002-7666-8504JörnWarneckeMax Planck Institute for Solar System Research, Germany0000-0002-9292-4600PetriJ.KäpyläInstitute for Astrophysics, University of Göttinge, Germany0000-0001-9619-0053AndreasSchreiberNo current affiliationPiyaliChatterjeeIndian Institute of Astrophysics, Bengaluru, India0000-0002-0181-2495MaaritJ.KäpyläAstroinformatics, Department of Computer Science, Aalto University, Finland, Max Planck Institute for Solar System Research, Germany0000-0002-9614-2200Xiang-YuLiNordita, KTH Royal Institute of Technology and Stockholm University, Sweden0000-0002-5722-0018JonasKrügerSINTEF Energy Research, Trondheim, Norway, Norwegian University of Science and Technology, Norway0000-0001-8036-0695JørgenR.AarnesNorwegian University of Science and Technology, Norway0000-0002-5899-2597GraemeR.SarsonSchool of Mathematics, Statistics and Physics, Newcastle University, UK0000-0001-6774-9372JeffreyS.OishiDepartment of Physics & Astronomy, Bates College, ME, USA0000-0001-8531-6570JenniferSchoberLaboratoire d'Astrophysique, EPFL, Sauverny, Switzerland0000-0001-7888-6671RaphaëlPlassonAvignon Université, France0000-0003-2319-1463ChristerSandinNordita, KTH Royal Institute of Technology and Stockholm University, Sweden0000-0002-6370-5505EwaKarchniwyNorwegian University of Science and Technology, Norway, Institute of Thermal Technology, Silesian University of Technology, Poland0000-0001-6709-1160LuizFelippe S.RodriguesSchool of Mathematics, Statistics and Physics, Newcastle University, UK, Radboud University, Netherlands0000-0002-3860-0525AlexanderHubbardDepartment of Astrophysics, American Museum of Natural History, NY, USAGustavoGuerreroPhysics Department, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil0000-0002-2671-8796AndrewSnodinSchool of Mathematics, Statistics and Physics, Newcastle University, UKIllaR.LosadaNordita, KTH Royal Institute of Technology and Stockholm University, Sweden0000-0002-0416-7516JohannesPekkiläAstroinformatics, Department of Computer Science, Aalto University, Finland0000-0002-1974-7150ChengengQianState Key Laboratory of Explosion Science and Technology, Beijing Institute of Technology, China0000-0002-5560-547510.21105/joss.02807https://doi.org/10.5281/zenodo.4553325Perl, Python, Fortranhttps://joss.theoj.org/papers/10.21105/joss.02807.pdfFortran90, fluid dynamics, magnetohydrodynamics, IDL, astrophysics, radiation, inertial particles, combustiontag:joss.theoj.org,2005:Paper/20092020-11-04T21:35:11Z2021-02-15T11:30:00ZDeepReg: a deep learning toolkit for medical image registrationacceptedv0.1.02020-09-01 20:36:16 UTC552020-11-04 21:35:11 UTC520202705YunguanFuWellcome/EPSRC Centre for Surgical and Interventional Sciences, University College London, London, UK, Centre for Medical Image Computing, University College London, London, UK, InstaDeep, London, UK0000-0002-1184-7421NinaMontañaBrownWellcome/EPSRC Centre for Surgical and Interventional Sciences, University College London, London, UK, Centre for Medical Image Computing, University College London, London, UK0000-0001-5685-971XShaheerU.SaeedWellcome/EPSRC Centre for Surgical and Interventional Sciences, University College London, London, UK, Centre for Medical Image Computing, University College London, London, UK0000-0002-5004-0663AdriàCasamitjanaCentre for Medical Image Computing, University College London, London, UK0000-0002-0539-3638ZacharyM. c.BaumWellcome/EPSRC Centre for Surgical and Interventional Sciences, University College London, London, UK, Centre for Medical Image Computing, University College London, London, UK0000-0001-6838-335XRémiDelaunayWellcome/EPSRC Centre for Surgical and Interventional Sciences, University College London, London, UK, Department of Surgical & Interventional Engineering, King’s College London, London, UK0000-0002-0398-4995QianyeYangWellcome/EPSRC Centre for Surgical and Interventional Sciences, University College London, London, UK, Centre for Medical Image Computing, University College London, London, UK0000-0003-4401-5311AlexanderGrimwoodWellcome/EPSRC Centre for Surgical and Interventional Sciences, University College London, London, UK, Centre for Medical Image Computing, University College London, London, UK0000-0002-2608-2580ZheMinWellcome/EPSRC Centre for Surgical and Interventional Sciences, University College London, London, UK0000-0002-8903-1561StefanoB.BlumbergCentre for Medical Image Computing, University College London, London, UK0000-0002-7150-9918JuanEugenioIglesiasCentre for Medical Image Computing, University College London, London, UK, Martinos Center for Biomedical Imaging, Massachusetts General Hospital and Harvard Medical School, Boston, USA, Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Boston, USA0000-0001-7569-173XDeanC.BarrattWellcome/EPSRC Centre for Surgical and Interventional Sciences, University College London, London, UK, Centre for Medical Image Computing, University College London, London, UK0000-0003-2916-655XEsterBonmatiWellcome/EPSRC Centre for Surgical and Interventional Sciences, University College London, London, UK, Centre for Medical Image Computing, University College London, London, UK0000-0001-9217-5438DanielC.AlexanderCentre for Medical Image Computing, University College London, London, UK0000-0003-2439-350XMatthewJ.ClarksonWellcome/EPSRC Centre for Surgical and Interventional Sciences, University College London, London, UK, Centre for Medical Image Computing, University College London, London, UK0000-0002-5565-1252TomVercauterenDepartment of Surgical & Interventional Engineering, King’s College London, London, UK0000-0003-1794-0456YipengHuWellcome/EPSRC Centre for Surgical and Interventional Sciences, University College London, London, UK, Centre for Medical Image Computing, University College London, London, UK0000-0003-4902-048610.21105/joss.02705https://doi.org/10.5281/zenodo.4210215Pythonhttps://joss.theoj.org/papers/10.21105/joss.02705.pdfTensorFlow, medical image registration, image fusion, deep learning, neural networkstag:joss.theoj.org,2005:Paper/15212020-07-10T19:30:53Z2021-02-15T11:30:58ZBiRank: Fast and Flexible Ranking on Bipartite Networks with R and Pythonacceptedv0.1.12020-02-18 22:08:18 UTC512020-07-10 19:30:53 UTC520202315Kai-ChengYangLuddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, INBrianAronsonDepartment of Sociology, Indiana University, Bloomington, INYong-YeolAhnLuddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN10.21105/joss.02315https://doi.org/10.5281/zenodo.3939045R, Pythonhttps://joss.theoj.org/papers/10.21105/joss.02315.pdfbipartite network, PageRank, ranking, centrality