tag:joss.theoj.org,2005:/papers/by/Musga%20QureischiJournal of Open Source Software2018-01-16T12:42:02ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/2882018-01-16T12:42:02Z2021-02-15T11:33:52ZchloroExtractor: extraction and assembly of the chloroplast genome from whole genome shotgun dataacceptedv1.0.02017-09-29 05:50:43 UTC212018-01-16 12:42:02 UTC32018464MarkusJ.AnkenbrandDepartment of Animal Ecology and Tropical Biology (Zoology III), University of Würzburg, Germany, These authors contributed equally to this work0000-0002-6620-807XSimonPfaffCenter for Computational and Theoretical Biology, University of Würzburg, These authors contributed equally to this work0000-0001-8505-9439NiklasTerhoevenCenter for Computational and Theoretical Biology, University of Würzburg, Department of Bioinformatics, University of WürzburgMusgaQureischiDepartment of Bioinformatics, University of Würzburg, Centre for Experimental Molecular Medicine, University Clinics Würzburg, Germany0000-0001-9661-8494MaikGündelDepartment of Bioinformatics, University of Würzburg0000-0002-0502-4576ClemensL.WeißResearch Group for Ancient Genomics and Evolution, Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, GermanyThomasHacklDepartment of Civil and Environmental Engineering, Massachusetts Institute of Technology0000-0002-0022-320XFrankFörsterCenter for Computational and Theoretical Biology, University of Würzburg, Department of Bioinformatics, University of Würzburg, Fraunhofer Institute for Molecular Biology and Applied Ecology IME, Applied Ecology and Bioresources, Gießen, Germany0000-0003-4166-542310.21105/joss.00464https://doi.org/10.5281/zenodo.1148955R, Perlhttps://joss.theoj.org/papers/10.21105/joss.00464.pdfchloroplast, genome, assembly