tag:joss.theoj.org,2005:/papers/by/Mainak%20JasJournal of Open Source Software2023-12-15T17:51:50ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/47162023-12-15T17:51:50Z2023-12-16T20:57:44ZHNN-core: A Python software for cellular and circuit-level interpretation of human MEG/EEGaccepted0.32023-08-23 18:15:30 UTC922023-12-15 17:51:50 UTC820235848MainakJasAthinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Boston, MA, USA0000-0002-3199-9027RyanThorpeDepartment of Neuroscience, Brown University, Providence, RI, USA, Robert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA0000-0003-2491-8599NicholasTolleyDepartment of Neuroscience, Brown University, Providence, RI, USA, Robert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA0000-0003-0358-0074ChristopherBaileyDepartment of Clinical Medicine, Aarhus University, Aarhus, Denmark0000-0003-3318-3344StevenBrandtDepartment of Neuroscience, Brown University, Providence, RI, USA, Robert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USABlakeCaldwellBassett Medical Center, Cooperstown, NY, USA0000-0002-6882-6998HuziChengDepartment of Psychological and Brain Sciences, Indiana University Bloomington, Bloomington, IN, USADylanDanielsRobert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA0009-0008-1958-353XCarolinaFernandezPujolDepartment of Biomedical Engineering, University of Miami, Coral Gables, FL, USA0009-0003-0611-1270MostafaKhalilDepartment of Psychiatry and Behavioral Health, Penn State Milton S. Hershey Medical Center, Penn State College of Medicine, Hershey, PA, USASamikaKanekarWarren Alpert Medical, Brown University, Providence, RI0000-0002-6111-4461CarmenKohlRobert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA0000-0001-7585-595XOrsolyaKolozsváriDepartment of Psychology, University of Jyväskylä, Jyväskylä, Finland, Jyväskylä Centre for Interdisciplinary Brain Research, University of Jyväskylä, Jyväskylä, Finland0000-0002-1619-6314KaisuLankinenAthinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Boston, MA, USA, Department of Radiology, Harvard Medical School, Boston, MA, USA0000-0003-2210-2385KennethLoiRobert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA, Department of Molecular and Cell Biology; Innovative Genomics Institute, University of California, Berkeley, Berkeley, CA, USASamNeymotinCenter for Biomedical Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA, Department of Psychiatry, New York University Grossman School of Medicine, New York, NY, USA0000-0003-3646-5195RajatPartaniDepartment of Computer Science and Engineering, National Institute of Technology Karnataka, Karnataka, India0000-0002-6863-7046MattanPelahRobert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA, Florida State University, Tallahassee, FL, USAAlexRockhillDepartment of Human Physiology, University of Oregon, Eugene, OR, USA0000-0003-3868-7453MohamedSherifDepartment of Psychiatry and Human Behavior, Brown University, Providence, RI, USA, Rhode Island Hospital, Providence, RI, USA0000-0002-8951-1645MattiHamalainenDepartment of Neuroscience and Biomedical Engineering, Aalto University, Espoo, Finland0000-0001-6841-112XStephanieJonesDepartment of Neuroscience, Brown University, Providence, RI, USA, Robert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA0000-0001-6760-530110.21105/joss.05848https://doi.org/10.5281/zenodo.10289164Python, Jupyter Notebook, AMPLhttps://joss.theoj.org/papers/10.21105/joss.05848.pdfneuroscience, EEG, MEG, modeling, neocortextag:joss.theoj.org,2005:Paper/13792020-03-01T23:43:39Z2021-02-15T11:31:19ZPyglmnet: Python implementation of elastic-net regularized generalized linear modelsacceptedv1.12019-11-26 03:54:41 UTC472020-03-01 23:43:39 UTC520201959MainakJasMassachusetts General Hospital, Harvard Medical School0000-0002-3199-9027TitipatAchakulvisutUniversity of Pennsylvania0000-0002-2124-2979AidIdrizovićLoyola UniversityDanielAcunaUniversity of SyracuseMatthewAntalekNorthwestern UniversityViniciusMarquesLoyola UniversityTommyOdlandSonat ConsultingRaviPrakashGargNorthwestern UniversityMayankAgrawalPrinceton UniversityYuUmegakiNTT DATA Mathematical Systems IncPeterFoley6050000-0002-0304-7213HugoFernandesRockets of Awesome0000-0002-0168-4104DrewHarrisEpoch CapitalBeibinLiUniversity of WashingtonOlivierPietersIDLab-AIRO -- Ghent University -- imec, Research Institute for Agriculture, Fisheries and Food0000-0002-5473-4849ScottOttersonClean Power ResearchGiovanniDe ToniUniversity of Trento0000-0002-8387-9983ChrisRodgersColumbia University0000-0003-1762-3450EvaDyerGeorgia TechMattiHamalainenMassachusetts General Hospital, Harvard Medical SchoolKonradKordingUniversity of PennsylvaniaPavanRamkumarSystem1 Biosciences Inc0000-0001-7450-072710.21105/joss.01959https://doi.org/10.5281/zenodo.3686564Pythonhttps://joss.theoj.org/papers/10.21105/joss.01959.pdfglm, machine-learning, lasso, elastic-net, group-lassotag:joss.theoj.org,2005:Paper/13182019-12-18T14:40:14Z2021-02-15T11:31:25ZMNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysisacceptedv0.32019-11-04 17:26:29 UTC442019-12-18 14:40:14 UTC420191896StefanAppelhoffCenter for Adaptive Rationality, Max Planck Institute for Human Development, Berlin, Germany0000-0001-8002-0877MatthewSandersonDepartment of Cognitive Sciences, Macquarie University, Sydney, Australia0000-0002-4645-8979TeonL.BrooksMozilla0000-0001-7344-3230Marijnvan VlietDepartment of Neuroscience and Biomedical Engineering, Aalto University, Espoo, Finland0000-0002-6537-6899RomainQuentinHuman Cortical Physiology and Neurorehabilitation Section, NINDS, NIH, Bethesda, Maryland 208920000-0001-7659-3605ChrisHoldgrafUC Berkeley, Project Jupyter0000-0002-2391-0678MaximilienChaumonInstitut du cerveau et de la moelle épinière (ICM), Paris, France0000-0001-9664-8861EzequielMikulanDepartment of Biomedical and Clinical Sciences 'L. Sacco', University of Milan, Milan, Italy0000-0001-7259-6120KambizTavabiInstitute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA0000-0003-1881-892XRichardHöchenbergerInstitute of Neuroscience and Medicine (INM-3), Research Center Jülich, Germany0000-0002-0380-4798DominikWelkeMax-Planck-Institute for Empirical Aesthetics, Frankfurt a.M., Germany0000-0002-5529-1998ClemensBrunnerInstitute of Psychology, University of Graz, Austria0000-0002-6030-2233AlexanderP.RockhillUniversity of Oregon, Eugene OR, USA0000-0003-3868-7453EricLarsonInstitute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA0000-0003-4782-5360AlexandreGramfortUniversité Paris-Saclay, Inria, CEA, Palaiseau, France0000-0001-9791-4404MainakJasAthinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, USA0000-0002-3199-902710.21105/joss.01896https://doi.org/10.5281/zenodo.3580273Pythonhttps://joss.theoj.org/papers/10.21105/joss.01896.pdfBIDS, MNE, neuroimaging, MEG, EEG, iEEGtag:joss.theoj.org,2005:Paper/9062019-08-12T18:08:03Z2021-02-15T11:32:28ZPyBIDS: Python tools for BIDS datasetsaccepted0.8.02019-02-28 17:47:22 UTC402019-08-12 18:08:03 UTC420191294TalYarkoniUniversity of Texas at Austin0000-0002-6558-5113ChristopherJ.MarkiewiczStanford University0000-0002-6533-164XAlejandrode la VegaUniversity of Texas at Austin0000-0001-9062-3778KrzysztofJ.GorgolewskiStanford University0000-0003-3321-7583TaylorSaloFlorida International University0000-0001-9813-3167YaroslavO.HalchenkoDartmouth College0000-0003-3456-2493QuintenMcNamaraUniversity of Texas at AustinKristaDeStasioUniversity of Oregon0000-0002-3959-9060Jean-BaptistePolineMcGill University0000-0002-9794-749XDmitryPetrovUniversity of Southern CaliforniaValérieHayot-SassonConcordia University0000-0002-4830-4535DylanM.NielsonNational Institute of Mental Health0000-0003-4613-6643JohanCarlinMRC Cognition and Brain Sciences Unit0000-0003-0933-1239GregoryKiarMontreal Neurological Institute and Hospital0000-0001-8915-496XKirstieWhitakerAlan Turing Institute0000-0001-8498-4059ElizabethDuPreMontreal Neurological Institute and Hospital0000-0003-1358-196XAdinaWagnerOtto-von-Guericke University Magdeburg0000-0003-2917-3450LeeS.TirrellCorticoMetrics LLC0000-0001-9393-8361MainakJasTélécom ParisTech, France0000-0002-3199-9027MichaelHankeOtto-von-Guericke University Magdeburg0000-0001-6398-6370RussellA.PoldrackStanford University0000-0001-6755-0259OscarEstebanStanford University0000-0001-8435-6191StefanAppelhoffMax Planck Institute for Human Development, Berlin, Germany0000-0001-8002-0877ChrisHoldgrafUniversity of California at Berkeley0000-0002-2391-0678IslaStadenQueen Mary University London0000-0002-0795-1154BertrandThirionINRIA0000-0001-5018-7895DaveF.KleinschmidtRutgers University0000-0002-7442-2762JohnA.LeeNational Institute of Mental Health0000-0001-5884-4247MatteoVisconti Oleggiodi CastelloUniversity of California at Berkeley0000-0001-7931-5272MichaelP.NotterUniversity of Lausanne0000-0002-5866-047XRossBlairStanford University0000-0003-3007-105610.21105/joss.01294https://doi.org/10.5281/zenodo.3333492Pythonhttps://joss.theoj.org/papers/10.21105/joss.01294.pdfBIDS, neuroimaging