tag:joss.theoj.org,2005:/papers/by/M%C3%A9lissa%20Cardon
Journal of Open Source Software
2017-08-30T00:00:00Z
Journal of Open Source Software
https://joss.theoj.org
tag:joss.theoj.org,2005:Paper/243
2017-08-30T00:00:00Z
2021-02-15T11:34:00Z
'Sequana': a Set of Snakemake NGS pipelines
accepted
0.4.1
2017-07-24 11:05:35 UTC
16
2017-08-30 00:00:00 UTC
2
2017
352
Thomas
Cokelaer
Institut Pasteur - Bioinformatics and Biostatistics Hub - C3BI, USR 3756 IP CNRS - Paris, France, Institut Pasteur - Biomics Pole - Paris, France
0000-0001-6286-1138
Dimitri
Desvillechabrol
Institut Pasteur - Biomics Pole - Paris, France
0000-0002-4947-7876
Rachel
Legendre
Institut Pasteur - Bioinformatics and Biostatistics Hub - C3BI, USR 3756 IP CNRS - Paris, France, Institut Pasteur - Biomics Pole - Paris, France
0000-0002-5196-9431
Mélissa
Cardon
Institut Pasteur - Biomics Pole - Paris, France
0000-0001-9906-3236
10.21105/joss.00352
https://doi.org/10.5281/zenodo.853160
Jupyter Notebook, Python
https://joss.theoj.org/papers/10.21105/joss.00352.pdf
snakemake, rna-seq, variant calling, taxonomy, denovo, pipeline, genome coverage