JOSS Papers: by Lee S. Katz

All Papers
4069
 Published Papers
3667
 Active Papers
402
published Published 2 months ago

stylo: a lightweight nanopore assembly pipeline optimized for enteric bacteria

Nextflow
@mohitmthakur
10.21105/joss.09695
published Published over 1 year ago

Mashpit: sketching out genomic epidemiology

Python
@tongzhouxu
10.21105/joss.07306
published Published almost 2 years ago

primerForge: a Python program for identifying primer pairs capable of distinguishing groups of genomes from each other

Python
@dr-joe-wirth
10.21105/joss.06850
published Published over 2 years ago

Fasten: a toolkit for streaming operations on fastq files

Rust
@lskatz
10.21105/joss.06030
published Published over 4 years ago

Sepia, a taxonomy oriented read classifier in Rust

Python Rust
@hcdenbakker
10.21105/joss.03839
published Published over 5 years ago

SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data

Perl Python Prolog
@lskatz
10.21105/joss.02334
published Published over 6 years ago

Mashtree: a rapid comparison of whole genome sequence files

Perl
@lskatz
10.21105/joss.01762
Displaying 7 papers

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ISSN 2475-9066