tag:joss.theoj.org,2005:/papers/by/Daniel%20RyanJournal of Open Source Software2023-12-15T17:51:50ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/47162023-12-15T17:51:50Z2023-12-16T20:57:44ZHNN-core: A Python software for cellular and circuit-level interpretation of human MEG/EEGaccepted0.32023-08-23 18:15:30 UTC922023-12-15 17:51:50 UTC820235848MainakJasAthinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Boston, MA, USA0000-0002-3199-9027RyanThorpeDepartment of Neuroscience, Brown University, Providence, RI, USA, Robert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA0000-0003-2491-8599NicholasTolleyDepartment of Neuroscience, Brown University, Providence, RI, USA, Robert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA0000-0003-0358-0074ChristopherBaileyDepartment of Clinical Medicine, Aarhus University, Aarhus, Denmark0000-0003-3318-3344StevenBrandtDepartment of Neuroscience, Brown University, Providence, RI, USA, Robert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USABlakeCaldwellBassett Medical Center, Cooperstown, NY, USA0000-0002-6882-6998HuziChengDepartment of Psychological and Brain Sciences, Indiana University Bloomington, Bloomington, IN, USADylanDanielsRobert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA0009-0008-1958-353XCarolinaFernandezPujolDepartment of Biomedical Engineering, University of Miami, Coral Gables, FL, USA0009-0003-0611-1270MostafaKhalilDepartment of Psychiatry and Behavioral Health, Penn State Milton S. Hershey Medical Center, Penn State College of Medicine, Hershey, PA, USASamikaKanekarWarren Alpert Medical, Brown University, Providence, RI0000-0002-6111-4461CarmenKohlRobert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA0000-0001-7585-595XOrsolyaKolozsváriDepartment of Psychology, University of Jyväskylä, Jyväskylä, Finland, Jyväskylä Centre for Interdisciplinary Brain Research, University of Jyväskylä, Jyväskylä, Finland0000-0002-1619-6314KaisuLankinenAthinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Boston, MA, USA, Department of Radiology, Harvard Medical School, Boston, MA, USA0000-0003-2210-2385KennethLoiRobert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA, Department of Molecular and Cell Biology; Innovative Genomics Institute, University of California, Berkeley, Berkeley, CA, USASamNeymotinCenter for Biomedical Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA, Department of Psychiatry, New York University Grossman School of Medicine, New York, NY, USA0000-0003-3646-5195RajatPartaniDepartment of Computer Science and Engineering, National Institute of Technology Karnataka, Karnataka, India0000-0002-6863-7046MattanPelahRobert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA, Florida State University, Tallahassee, FL, USAAlexRockhillDepartment of Human Physiology, University of Oregon, Eugene, OR, USA0000-0003-3868-7453MohamedSherifDepartment of Psychiatry and Human Behavior, Brown University, Providence, RI, USA, Rhode Island Hospital, Providence, RI, USA0000-0002-8951-1645MattiHamalainenDepartment of Neuroscience and Biomedical Engineering, Aalto University, Espoo, Finland0000-0001-6841-112XStephanieJonesDepartment of Neuroscience, Brown University, Providence, RI, USA, Robert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA0000-0001-6760-530110.21105/joss.05848https://doi.org/10.5281/zenodo.10289164Python, Jupyter Notebook, AMPLhttps://joss.theoj.org/papers/10.21105/joss.05848.pdfneuroscience, EEG, MEG, modeling, neocortextag:joss.theoj.org,2005:Paper/42922023-09-22T13:55:53Z2023-09-23T10:22:37Zndcube: Manipulating N-dimensional Astronomical Data in Pythonacceptedv2.1.12023-03-09 12:20:31 UTC892023-09-22 13:55:53 UTC820235296DanielF.RyanUniversity of Applied Sciences Northwest Switzerland, Switzerland, American University, USA0000-0001-8661-3825StuartMumfordAperio Software Ltd, UK0000-0003-4217-4642YashSharmaMeta Platforms Inc., UKAnkitKumarBaruahWorkato Gmbh, GermanyAdwaitBhopeUptycs India Pvt. Ltd., India0000-0002-7133-8776NabilFreijLockheed Martin Solar and Astrophysics Laboratory, USA, Bay Area Environmental Research Institute, USA0000-0002-6253-082XLauraA.HayesEuropean Space Agency, ESTEC0000-0002-6835-2390WillT.BarnesNASA Goddard Space Flight Center, USA, American University, USA0000-0001-6874-2594BaptistePellorceClaude Bernard Lyon 1 University, France, Institute of Theoretical Astrophysics, NorwayRichardO'SteenSpace Telescope Science Institute, USA0000-0002-2432-8946DerekHomeierAperio Software Ltd, UK0000-0002-8546-9128J.MarcusHughesSouthwest Research Institute, USA0000-0003-3410-7650DavidStansbyAdvanced Research Computing Centre, University College London, UK0000-0002-1365-1908AlbertY.ShihNASA Goddard Space Flight Center, USA0000-0001-6874-2594MatthewJ.WestSouthwest Research Institute, USA0000-0002-0631-239310.21105/joss.05296https://doi.org/10.5281/zenodo.8126828Pythonhttps://joss.theoj.org/papers/10.21105/joss.05296.pdfastronomytag:joss.theoj.org,2005:Paper/12792020-02-14T12:42:53Z2021-02-15T11:31:32ZSunPy: A Python package for Solar Physicsacceptedv1.0.02019-10-07 12:20:35 UTC462020-02-14 12:42:53 UTC520201832StuartJ.MumfordSP2RC, School of Mathematics and Statistics, The University of Sheffield, UK, National Solar Observatory, 3665 Discovery Drive, Boulder, CO 80303, Aperio Software Ltd., Headingley Enterprise and Arts Centre, Bennett Road, Leeds LS6 3HN0000-0003-4217-4642NabilFreijInstitute for Environmental Analytics, University of Reading, Reading RG6 6BX0000-0002-6253-082XStevenChristeNASA Goddard Space Flight Center, Greenbelt, MD 20771, USA0000-0001-6127-795XJackIrelandNASA Goddard Space Flight Center, Greenbelt, MD 20771, USA0000-0002-2019-8881FlorianMayerNoneV.KeithHughittCenter for Cancer Research, National Cancer Institute, Bethesda, MD 20892-9760, USA0000-0003-0787-9559AlbertY.ShihNASA Goddard Space Flight Center, Greenbelt, MD 20771, USA0000-0001-6874-2594DanielF.RyanAmerican University, Washington, DC 20016, USA, NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA0000-0001-8661-3825SimonLiedtkeNoneDavidPérez-SuárezUniversity College London, Gower Street, London, UK0000-0003-0784-6909PritishChakrabortyManav Rachna University0000-0001-8875-5819VishnunarayanKNoneAndrewInglisCatholic University of America / NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA0000-0003-0656-2437PunyaslokPattnaikInternational Institute of Information Technology, Hyderabad 500 032, India0000-0001-6216-2353BrigittaSipőczDIRAC Institute, Department of Astronomy, University of Washington, Seattle, WA 98195, USA0000-0002-3713-6337RishabhSharmaNoneAndrewLeonardAperio Software Ltd., Headingley Enterprise and Arts Centre, Bennett Road, Leeds LS6 3HN0000-0001-5270-7487DavidStansbyMullard Space Science Laboratory, University College London, Surrey, UK0000-0002-1365-1908RussellHewettDepartment of Mathematics, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061-0123, USA0000-0001-8944-4705AlexHamiltonNoneLauraHayesNASA Goddard Space Flight Center, Greenbelt, MD 20771, USA0000-0002-6835-2390AsishPandaNoneMattEarnshawNoneNitinChoudharyDepartment of Mathematics, Indian Institute of Technology, Kharagpur, 721302, India0000-0001-6915-4583AnkitKumarNonePrateekChandaDepartment of Computer Science & Technology, Indian Institute of Engineering Science & Technology, Shibpur, 711103, India0000-0002-7068-2866MdAkramulHaqueDepartment of Mechanical Engineering, ZHCET, Aligarh Muslim University, Aligarh, IndiaMichaelS.KirkCatholic University of America / NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA0000-0001-9874-1429MichaelMuellerNoneSudarshanKongeNoneRajulSrivastavaNoneYashJainIndian Institute of Technology, Kharagpur, 721302, India0000-0001-5347-4734SamuelBennettNoneAnkitBaruahNoneWillBarnesLockheed Martin Solar and Astrophysics Laboratory / Bay Area Environmental Research Institute0000-0001-9642-6089MichaelCharltonNoneShaneMaloneyTrinity College Dublin / Dublin Institute for Advanced Studies0000-0002-4715-1805NickyChorleyCentre for Fusion, Space and Astrophysics, Physics Department, University of Warwick, Coventry CV4 7AL, United Kingdom0000-0002-2747-2716HimanshuNoneSanskarModiNoneJamesPaulMasonNoneNaman9639NoneJoseIvan CamposRozoInstitut für Physik/IGAM - Karl-Franzens University of Graz, Austria0000-0001-8883-6790LarryManleyNoneAgneetChatterjeeJadavpur University, Kolkata0000-0002-0961-9569JohnEvansNoneMichaelMalochaNoneMonicaG.BobraW.W. Hansen Experimental Physics Laboratory, Stanford University, Stanford, CA 94305, USA0000-0002-5662-9604SouravGhoshJadavpur University, Kolkata0000-0002-7259-5651Airmansmith97NoneDominikStańczakUniversity of Warsaw0000-0001-6291-8843RubenDe VisscherNoneShresthVermaABV-Indian Institute of Information Technology and Management, Gwalior, MP 474015, India0000-0003-0370-5471AnkitAgrawalNoneDuminduBuddhikaNoneSwapnilSharmaNoneJongyeobParkSpace Science Division, Korea Astronomy and Space Science Institute, Daejeon 34055, South Korea0000-0002-1063-9129MattBatesNoneDhruvGoelNoneGarrisonTaylorHarvard-Smithsonian Center for Astrophysics, Cambridge, MA 02138, USAGoranCetusicNoneJacobNoneMateoInchaurrandietaNoneSallyDacieMullard Space Science Laboratory, University College London, Holmbury St. Mary, Surrey, RH5 6NT, UK0000-0001-7572-2903SanjeevDubeyNoneDeepankarSharmaNoneErikM.BrayNoneJaiRamRideoutDogfox Software LLC, Flagstaff, AZ 86001, USA0000-0003-2587-1454SergeZahniyNASA Goddard Space Flight Center, Greenbelt, MD 20771, USA0000-0001-8835-7087TomasMeszarosNoneAbhigyanBoseNoneAndréChicralaNorthumbria University, England0000-0002-5230-4909AnkitNoneChloéGuennouNoneDanielD'AvellaNoneDanielWilliamsSUPA, University of Glasgow, Glasgow G12 8QQ, United Kingdom0000-0003-3772-198XJordanBallewNoneNickMurphyCenter for Astrophysics | Harvard & Smithsonian0000-0001-6628-8033PriyankLodhaNoneThomasRobitailleNoneYashKrishanNoneAndrewHillNoneArthurEigenbrotNational Solar Observatory0000-0003-0810-4368BenjaminMampaeyRoyal Observatory of Belgium0000-0001-6541-4966BernhardM.WiedemannNoneCarlosMolinaNone0000-0003-0300-4106DuyguKeşkekNoneIshtyaqHabibNoneJosephLettsNone0000-0001-9900-739XJuanjoBazánCIEMAT, Astroparticle physics, Madrid, Spain.0000-0001-7699-3983QuinnArbolanteLockheed Martin Solar and Astrophysics Laboratory0000-0003-0260-453XReidGomillionNoneYashKothariNoneYashSharmaNoneAbigailL.StevensDepartment of Physics & Astronomy, Michigan State University, 567 Wilson Road, East Lansing, MI 48824, USA, Department of Astronomy, University of Michigan, 1085 South University Avenue, Ann Arbor, MI 48109, USA0000-0002-5041-3079AdrianPrice-WhelanCenter for Computational Astrophysics, Flatiron Institute, 162 Fifth Ave, New York, NY 10010, USA0000-0003-0872-7098AmbarMehrotraNoneArseniyKustovNoneBrandonStoneNoneTrung KiennilDangSaw Swee Hock School of Public Health, National University Health System, National University of Singapore, Singapore0000-0001-7562-6495EmmanuelAriasNoneFionnlaghMackenzieDoverSP2RC, School of Mathematics and Statistics, The University of Sheffield, UK0000-0002-1984-7303FreekVerstringeRoyal Observatory of BelgiumGulshanKumarInternational Institute of Information Technology, Hyderabad0000-0001-8523-7223HarshMathurIndian Institute of Astrophysics, Bangalore0000-0001-5253-4213IgorBabuschkinNoneJaylenWimbishNoneJuanCamiloBuitrago-CasasNoneKalpeshKrishnaUniversity of Massachusetts, Amherst0000-0001-6574-0817KaustubhHiwareIndian Institute of Technology, Kharagpur0000-0003-3301-1016ManasMangaonkarNoneMatthewMenderoNoneMickaëlSchoentgenNone0000-0002-0106-4810NorbertG.GyengeSP2RC, School of Mathematics and Statistics, University of Sheffield, Sheffield, S3 7RH, UK0000-0003-0464-1537OleStreicherLeibniz Institute for Astrophysics Potsdam, Germany0000-0001-7751-1843RajasekharReddyMekalaNoneRishabhMishraNoneShashankSrikanthInternational Institute of Information Technology, HyderabadSarthakJainNoneTannmayYadavDepartment of Chemical Engineering, Indian Institute of Technology Kharagpur, 721302, India0000-0002-3143-5635TessaD.WilkinsonNoneTiagoM. d.PereiraRosseland Centre for Solar Physics, University of Oslo, P.O. Box 1029 Blindern, NO-0315 Oslo, Norway, Institute of Theoretical Astrophysics, University of Oslo, P.O. Box 1029 Blindern, NO-0315 Oslo, Norway0000-0003-4747-4329YudhikAgrawalInternational Institute of Information Technology, Hyderabad 500 032, India0000-0003-3827-6857JamescalixtoNoneYasintodaNoneSophieA.MurrayTrinity College Dublin, Ireland0000-0002-9378-531510.21105/joss.01832https://doi.org/10.5281/zenodo.3666625Python, C, IDLhttps://joss.theoj.org/papers/10.21105/joss.01832.pdfAstronomy, Solar physicstag:joss.theoj.org,2005:Paper/2012017-07-03T00:00:00Z2021-02-15T11:34:07Zkhmer release v2.1: software for biological sequence analysisacceptedv2.12017-05-26 00:17:17 UTC152017-07-03 00:00:00 UTC22017272DanielStandageLab for Data Intensive Biology; School of Veterinary Medicine; University of California, Davis0000-0003-0342-8531AliAliyariIntegrative Genetics and Genomics Graduate Group; University of California, Davis0000-0003-0925-4886LisaJ.CohenLab for Data Intensive Biology; School of Veterinary Medicine; University of California, Davis, Molecular, Cellular, and Integrative Physiology Graduate Group; University of California, Davis0000-0002-3600-7218MichaelR.CrusoeCommon Workflow Language Project0000-0002-2961-9670TimHeadWild Tree Tech0000-0003-0931-3698LuizIrberLab for Data Intensive Biology; School of Veterinary Medicine; University of California, Davis, Computer Science Graduate Group; University of California, Davis0000-0003-4371-9659ShannonEkJoslinIntegrative Genetics and Genomics Graduate Group; University of California, Davis0000-0001-5470-1193N.B.KingsleyIntegrative Genetics and Genomics Graduate Group; University of California, Davis0000-0001-8574-8592KevinD.MurrayARC Centre of Excellence in Plant Energy Biology; Australian National University0000-0002-2466-1917RussellNechesMicrobiology Graduate Group; Univerity of California, Davis0000-0002-2055-8381CamilleScottLab for Data Intensive Biology; School of Veterinary Medicine; University of California, Davis, Computer Science Graduate Group; University of California, Davis0000-0001-8822-8779RyanSheanUniversity of WashingtonSaschaSteinbissDebian Project0000-0002-2151-0574CaitSydneyGoogle, Inc.C.TitusBrownLab for Data Intensive Biology; School of Veterinary Medicine; University of California, Davis, Department of Population Health and Reproduction; School of Veterinary Medicine; University of California, Davis0000-0001-6001-267710.21105/joss.00272https://doi.org/10.5281/zenodo.822478Python, C++, Roffhttps://joss.theoj.org/papers/10.21105/joss.00272.pdfbioinformatics, sequence analysis, Bloom filter, Count-Min sketch, de Bruijn graph, assembly, graph traversal, streaming, quality control