tag:joss.theoj.org,2005:/papers/by/Ben%20Taylor
Journal of Open Source Software
2016-12-05T00:00:00Z
Journal of Open Source Software
https://joss.theoj.org
tag:joss.theoj.org,2005:Paper/112
2016-12-05T00:00:00Z
2021-02-15T11:34:22Z
Multilocus sequence typing by blast from de novo assemblies against PubMLST
accepted
v2.1.1630910
2016-11-04 11:47:34 UTC
8
2016-12-05 00:00:00 UTC
1
2016
118
Andrew
J.
Page
Pathogen Informatics, Wellcome Trust Sanger Institute
0000-0001-6919-6062
Ben
Taylor
Pathogen Informatics, Wellcome Trust Sanger Institute
Jacqueline
A.
Keane
Pathogen Informatics, Wellcome Trust Sanger Institute
0000-0002-2021-1863
10.21105/joss.00118
https://doi.org/10.6084/m9.figshare.4285097.v1
Perl
https://joss.theoj.org/papers/10.21105/joss.00118.pdf
bioinformatics, MLST, multilocus sequence typing, blast, de novo assembly, bacteria
tag:joss.theoj.org,2005:Paper/61
2016-10-06T00:00:00Z
2021-02-15T11:34:25Z
GFF3toEMBL: Preparing annotated assemblies for submission to EMBL
accepted
v1.1.0
2016-09-21 13:16:29 UTC
6
2016-10-06 00:00:00 UTC
1
2016
80
Andrew
J.
Page
Pathogen Informatics, Wellcome Trust Sanger Institute
0000-0001-6919-6062
Sascha
Steinbiss
Pathogen Informatics, Wellcome Trust Sanger Institute
0000-0002-2151-0574
Ben
Taylor
Pathogen Informatics, Wellcome Trust Sanger Institute
Torsten
Seemann
University of Melbourne
0000-0001-6046-610X
Jacqueline
A.
Keane
Pathogen Informatics, Wellcome Trust Sanger Institute
0000-0002-2021-1863
10.21105/joss.00080
https://doi.org/10.6084/m9.figshare.3988815.v1
Python
https://joss.theoj.org/papers/10.21105/joss.00080.pdf
bioinformatics, annotation, EMBL