nterhoeven / reper

reper is a pipeline to detect repetitive sequences in genome sequencing data. The detection is based on kmer frequencies and does not rely on a genome assembly.
This allows an analysis of repeat...

ropensci / tidyhydat

Provides functions to extract historical and real-time national hydrometric data from Water Survey of Canada data sources http://dd.weather.gc.ca/hydrometric/csv/ and...

virgesmith / humanleague

This package provides tools for population microsynthesis from aggregate (and optionally seed) data, using quasirandom integer sampling to generate whole-number populations that match the marginal...

zedtaha / ivprobit-1.0

ivprobit fit an Instrumental variables probit model using the generalized least squares estimator

openclimatedata / pymagicc

Pymagicc is a thin Python wrapper around the reduced complexity climate model MAGICC6, wrapping the CC-BY-NC-SA licensed MAGICC6 binary.
It makes the MAGICC model, widely used in climate change...

edoddridge / aronnax

Aronnax is a highly idealised model for simulating large-scale (100-1000km) flows in the ocean. Aronnax is intended for theoretical and empirical oceanographers, as a (relatively) fast and...

warrenlr / xmatchview

Here we present xmatchview and xmatchview-conifer, tools for visualizing DNA sequence synteny.

scikit-learn-contrib / categorical-encoding

Category encoders is a scikit-learn-contrib package containing different transformers for encoding categorical data as numeric. This includes support for commonly used encoders such as one-hot or...

bjodah / pyodesys

pyodesys provides a straightforward way of numerically integrating systems of ordinary differential equations (initial value problems).
It unifies the interface of several libraries for performing...

sjspielman / phyphy

phyphy is a Python package aimed to facilitate and simplify usage of the popular bioinformatics software platform, HyPhy, in two primary ways: i) execute standard HyPhy analyses directly within the...