camillescott / shmlast

shmlast is a reimplementation of the Conditional Reciprocal Best Hits (https://github.com/cboursnell/crb-blast) algorithm for finding potential orthologs between a transcriptome and a...

jeff-goldsmith / vbvs.concurrent

The software implements statistical methods for fitting the functional linear concurrent model in R. Supporting methods extract coefficients, compute predicted values for new datasets, and...

mllg / batchtools

Tools for R to work with batch systems managed by schedulers like Slurm, Torque or Docker Swarm. Also offers functionality to compute and manage large scale computer experiments.

kactus2 / kactus2dev

Kactus2 is a graphical EDA tool targeted for packing and assembling building blocks for ASICs and FPGAs, based on the IP-XACT standard. It supports Verilog, VHDL, and other formats.

warrenlr / RAILS

Here, I make available two bioinformatics software tools to exploit this information for automated finishing (software Cobbler) and scaffolding (software RAILS) with long DNA sequences. They can be...

https://bitbucket.org/dghoshal/frieda

FRIEDA stands for Flexible Robust Intelligent Elastic Data Management. Scientific applications are increasingly using cloud resources for their data analysis workflows. FRIEDA is a Flexible Robust...

https://bitbucket.org/srcapps/germs-browser

This is a proof of concept integration between a database of infected patient information and a phylogenetic tree for discovery of relationships between infections and potential breakout detection.

DOI pending

sanger-pathogens / mlst_check

This tool allows for Multilocus sequence typing against 124 databases in pubMLST, covering all of the major human pathogens.

openeventdata / petrarch2

The PETRARCH2 coding program implements a new coding algorithm, based on a syntactic constituency parse, to extract who-did-what-to-whom political event data from structured news stories.

sewardlee337 / finreportr

'finreportr' is a R package that automates the downloading and processing of XBRL documents containing financial data for publicly-listed companies from the U.S. Securities and Exchange...