kdmurray91 / libqcpp

libqcpp is a C++ library that provides sequence read parsers that QC reads on-the-fly during parsing. It includes trimit, a command-line interface to this library.

ropensci / getCRUCLdata

The getCRUCLdata package from rOpenSci provides functions that automate importing CRU CL v. 2.0 climatology data into R, facilitate the calculation of minimum temperature and maximum temperature,...


cbcbeat is a Python-based software collection targeting forward and inverse solution of computational cardiac electrophysiology problems.

dgerosa / filltex

filltex is a simple tool to fill LaTex reference lists with records from the ADS and INSPIRE databases. filltex significantly speeds up the LaTex scientific writing workflow, as all required...

andim / noisyopt

Noisyopt is a Python library for local optimization of functions based on noisy evaluations.

gboeing / osmnx

OSMnx is a Python package for downloading OpenStreetMap street network data, constructing it into a NetworkX graph, then calculating shortest paths and analyzing, projecting, and visualizing the...

sanger-pathogens / saffrontree

Fast, reference-free pseudo-phylogenomic trees from raw reads or contigs, by utilising the k-mer profiles between samples.

MonashBioinformaticsPlatform / varistran

Noise in RNA-seq read count data is commonly modelled as following a negative binomial distribution, where the variance is a quadratic function of the expression level. Varistran transforms read...

domoritz / label_generator

The repository provides software to train a neural network to detect text in screen images. The repository also provides code that generates training data by extracting figures and text masks from...

howardjp / bumblebees

Virtual Bumblebees is a generalization of the Langton Ant that allows for three cell states.