MonashBioinformaticsPlatform / varistran

Noise in RNA-seq read count data is commonly modelled as following a negative binomial distribution, where the variance is a quadratic function of the expression level. Varistran transforms read...

Chilipp / psyplot.git

psyplot is an cross-platform open source python project that mainly combines the plotting utilities of matplotlib and the data management of the xarray package and integrates them into a software...

ropensci / visdat

visdat makes it easy to visualise your whole dataset so that you can visually identify problems.

bjmorgan / bsym

bsym is a Python module containing classes for symmetry analysis using matrix representations; e.g. configuration spaces, symmetry operations, and configurations. The primary intended use-case is...

xuanxu / nimbus

Nimbus is a Ruby gem that implements the Random Forest algorithm in a genome-wide prediction context.

mwmclean / RefManageR

RefManageR provides tools for importing and working with bibliographic references. It greatly enhances the bibentry class in R by providing a class BibEntry which stores BibTeX and BibLaTeX...

simonvh / genomepy

Genomepy is a command-line script and Python module to download genomes from UCSC, NCBI or Ensembl. This enables simple, straightforward and automatic downloads of genomic sequences.

ropensci / iheatmapr

iheatmapr is an R package for making complex, interactive heatmaps.

scikit-hep / root_numpy

root_numpy is a Python extension module interfacing NumPy with CERN’s ROOT software framework, providing the ability to analyse ROOT data within the broad ecosystem of scientific Python packages.

TACC / launcher

Launcher is a utility for performing simple, data parallel, high throughput computing (HTC) workflows on clusters, massively parallel processor (MPP) systems, workgroups of computers, and personal...