eSCAPE is a parallel landscape evolution model, built to simulate Earth surface dynamics at global scale and over geological times. The model is primarily designed to address problems related to...

The rr2 package provides methods to calculate three different R2s -- R2.lik, R2.resid and R2.pred -- for models with correlated errors, including Phylogenetic GLS, Phylogenetic Logistic Regression,...

Python implementation of quantum tensor network operations and simulations, in particular the matrix product state framework

Verde is a Python library for processing spatial data (bathymetry, geophysics surveys, etc) and interpolating it on regular grids (i.e., gridding). The methods in Verde are similar to supervised...

An R package to calculate taxonomic, functional, and phylogenetic diversity of ecological communities through Hill numbers.

`ungroup`

is an `R`

package that introduces a versatile method for ungrouping binned count data assuming that counts are Poisson distributed and that the underlying sequence over a fine grid to be...

This package provides tools for passing messages between R processes. This package can be applied to high performance computing environments, easily allowing parallel worker processes to...

alv is a simple console-based multi-sequence alignment viewer that enables easy browsing of alignments without starting a GUI. The paper files are found in the subdirectory doc/joss.

An R package survxai is a tool for creating explanations of survival models. For both, complex and simple survival models. It also enables to compare them. Currently, four explanation methods are...

A wrapper of different standard estimation methods for gravity models.

This package provides estimation methods for log-log models and multiplicative models.