bjodah / pyneqsys

Package for numerically solving symbolically defined systems of non-linear equations. Ties computer algebra systems (sympy foremost) and numerical solvers (MINPACK from SciPy, KINSOL from Sundials,...

warrenlr / xmatchview

Here we present xmatchview and xmatchview-conifer, tools for visualizing DNA sequence synteny.

oliviergimenez / GammaGompertzCR

GammaGompertzCR is an R package that allows estimating survival in free-ranging animal populations using a Gompertz capture-recapture model with a Gamma frailty to deal with individual heterogeneity.

sjspielman / phyphy

phyphy is a Python package aimed to facilitate and simplify usage of the popular bioinformatics software platform, HyPhy, in two primary ways: i) execute standard HyPhy analyses directly within the...

chloroExtractorTeam / chloroExtractor

The chloroExtractor is a perl based program which provides a pipeline for DNA extraction of chloroplast DNA from whole genome plant data.

kortschak / arrgh

The arrgh package provides a Go client for the OpenCPU system R server system, including management of a local server when needed. Data exchange between Go and OpenCPU is via standard HTTP content...

lebebr01 / highlightHTML

This software aims to facilitate and extend basic formatting of reproducible R markdown documents for text and tables compared to functionality supported by markdown. This package uses CSS and HTML...

ljvmiranda921 / pyswarms

PySwarms is a research toolkit for Particle Swarm Optimization (PSO) in Python. It's targeted for the use of researchers and practitioners who wants to compare their methods to classical...

databio / simpleCache

simpleCache is an R package providing functions for caching R objects. Its purpose is to encourage writing reusable, restartable, and reproducible analysis pipelines for projects with massive data...

arfc / moltres

Moltres is a physics application for multiphysics modeling of fluid-fueled molten salt reactors (MSRs). It couples equations for neutron diffusion, thermal hydraulics, and delayed neutron precursor...