MonashBioinformaticsPlatform / varistran

Noise in RNA-seq read count data is commonly modelled as following a negative binomial distribution, where the variance is a quadratic function of the expression level. Varistran transforms read...

SebastianoF / bruker2nifti

Medical image format converter: from raw Bruker ParaVision to nifti.

ornl-ndav / django-remote-submission

A Django application to manage long running job submission, including starting the job, saving logs, and storing results.

pjamesjoyce / lcopt

Lcopt is an open source Python package for creating fully parameterised Life Cycle Assessment (LCA) foreground models. It contains an intuitive Flask based user interface to greatly simplify the...

Chilipp / psyplot.git

psyplot is an cross-platform open source python project that mainly combines the plotting utilities of matplotlib and the data management of the xarray package and integrates them into a software...

ropensci / visdat

visdat makes it easy to visualise your whole dataset so that you can visually identify problems.

bjmorgan / bsym

bsym is a Python module containing classes for symmetry analysis using matrix representations; e.g. configuration spaces, symmetry operations, and configurations. The primary intended use-case is...

xuanxu / nimbus

Nimbus is a Ruby gem that implements the Random Forest algorithm in a genome-wide prediction context.

mwmclean / RefManageR

RefManageR provides tools for importing and working with bibliographic references. It greatly enhances the bibentry class in R by providing a class BibEntry which stores BibTeX and BibLaTeX...

simonvh / genomepy

Genomepy is a command-line script and Python module to download genomes from UCSC, NCBI or Ensembl. This enables simple, straightforward and automatic downloads of genomic sequences.