iferres / phylen

Phylen is an R package that performs automatic phylogenetic reconstruction given a set of Hidden Markov Models (HMMs). Genomes are screened against these HMMs, genes present in all genomes ("core...

FluxML / Flux.jl

Flux is library for machine learning, written using the numerical computing language Julia, and comparable to libraries like Theano, TensorFlow and PyTorch.

caseyyoungflesh / MCMCvis

MCMCvis is an R package to used to visualize, manipulate, and summarize MCMC output. MCMCvis was designed to perform key functions for MCMC analysis using minimal code, in order to free up time and...

pynucastro / pynucastro

Python interfaces to the nuclear reaction rate databases, including the JINA Reaclib nuclear reactions database. This project has 2 goals: allow for an exploration of rates and collections of rates...

FastNFT / FNFT

FNFT is a software library for the fast numerical computation of nonlinear Fourier transforms, which are also known as direct scattering transforms. FNFT is written in C and comes with a MATLAB...

WinVector / vtreat

vtreat is an R data.frame processor/conditioner that prepares messy real-world data for predictive modeling in a statistically sound manner. Common problems vtreat defends against: invalid values,...

MonashBioinformaticsPlatform / RNAsik-pipe

The RNAsik pipeline streamlines processing of RNA-seq data and facilitates the production of reproducible results. This pipeline can run standalone on workstations, cloud instances, or on High...

h5preserve / h5preserve

h5preserve is a wrapper around h5py and hdf5, providing easier serialisation of native python types. Its design is inspired by Camel, and follows its philosophy.

casics / nostril

Nostril (Nonsense String Evaluator) is a Python 3 module that can infer whether a given word or text string is likely to be nonsense or meaningful text. The main use case is to decide whether...

https://sourceforge.net/p/mcapl/mcapl_code/ci/master/tree/

The MCAPL (Model-checking agent programming languages) framework for creating interpreters for rational agent (BDI-style) programming languages and formally verifying programs running in those...