MonashBioinformaticsPlatform / RNAsik-pipe

The RNAsik pipeline streamlines processing of RNA-seq data and facilitates the production of reproducible results. This pipeline can run standalone on workstations, cloud instances, or on High...

DOI pending

HPAC / matchpy

MatchPy is a library for efficient pattern matching on symbolic expressions in Python.

DOI pending

barbagroup / PetIBM

PetIBM is a C++ library that implements immersed-boundary methods to solve 2D and 3D incompressible Navier-Stokes equations on stretched Cartesian grids, using a projection method. It uses PETSc...

DOI pending

resibots / limbo

Limbo (LIbrary for Model-Based Optimization) is an open-source C++11 library for Gaussian Processes and data-efficient optimization (e.g., Bayesian optimization) that is designed to be both highly...

DOI pending

dhhagan / py-opc

As shipped, the Alphasense OPC-N2 ships with a PC-ready GUI, but no acceptable drivers for using with popular microcontrollers. This library fixes that by providing an easy-to-use python library to...

DOI pending

xiangfstats / GenieR

genieR is an R package (R Core Team (2016)) for the inference of demographic history from reconstructed molecular phylogenies,modeled after the C++ package GENIE (Pybus and Rambaut 2002).

DOI pending

mpg-age-bioinformatics / bit

bit, [b]ermuda [i]nformation [t]riangle, is a git-based tool for the management of code and data.

DOI pending

edoddridge / aronnax

Aronnax is a highly idealised model for simulating large-scale (100-1000km) flows in the ocean. Aronnax is intended for theoretical and empirical oceanographers, as a (relatively) fast and...

DOI pending

j-faria / kima

kima is a package for the detection and characterization of exoplanets in radial-velocity data.
It uses the Diffusive Nested Sampling algorithm to estimate the posterior distribution of the...

DOI pending

gopherdata / gophernotes

Gophernotes allows users to program Go interactively in a browser-based or desktop notebook application (e.g., Jupyter or nteract).

DOI pending