jmborr / idpflex.git

idpflex clusters tens of thousands of protein conformations into a modest number of substates that can be analyzed by a researcher. Analysis tools are included in the package. Clustering is...

DOI pending

schalkdaniel / compboost

The R package compboost implements component-wise boosting in C++ using Rcpp and Armadillo to achieve efficient runtime behaviour and full memory control. It provides a modular object-oriented...

DOI pending

caporaso-lab / sample-classifier-ms

q2-sample-classifier is a plugin for the QIIME 2 microbiome bioinformatics platform that facilitates access, reproducibility, and interpretation of supervised learning (SL) methods for a broad...

DOI pending

davidnsousa / mcsd

MCSD is a simple and free open-source MATLAB/Octave tool designed to simulate diffusion processes in complex environments such as biological tissues.

DOI pending

gallantlab / cottoncandy

cottoncandy is a python scientific library for storing and accessing numpy array data from cloud-based object stores. cottoncandy obviates the need to write (or read) numpy array data to disk as an...

DOI pending

cicirello / JavaPermutationTools

The JavaPermutationTools (JPT) API provides Java classes that enable representing and generating permutations, as well as performing computation on permutations. This release includes...

DOI pending

ejhigson / nestcheck

A Python package for analysing nested sampling results. Calculates uncertainties on results, performs diagnostic tests and creates plots.

DOI pending

pvlib / pvlib-python

pvlib python is a community-supported open source tool that provides a set of functions and classes for simulating the performance of photovoltaic energy systems.

DOI pending

raamana / mrivis

mrivis provides easy ways to perform non-trivial medical image visualization tasks, as well as a base development kit to build even more customized visualizations.

DOI pending

pysal / spvcm

This is a package to estimate spatially-correlated variance components models/varying intercept models. In addition to a general toolkit to conduct Gibbs sampling in Python, the package also...

DOI pending